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Protein Overview: gi|78708993, gi|...

General Information:
Name(s) found: gi|78708993 [NCBI NR]
gi|215768444 [NCBI NR]
gi|125575636 [NCBI NR]
gi|115483322 [NCBI NR]
gi|113639863 [NCBI NR]
Description(s) found:
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  • gi|78708993|gb|ABB47968.1| U-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|215768444|dbj|BAH00673.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125575636|gb|EAZ16920.1| hypothetical protein OsJ_32402 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115483322|ref|NP_001065331.1| Os10g0552400 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113639863|dbj|BAF27168.1| Os10g0552400 [Oryza sativa Japonica Group] [NCBI NR]
  • Os10g0552400 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • U-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 431 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPEKVFVA LPAEAKSGRS TLSWALGHFR ATAIVVTHVH VPPQMIPVMG VKFHASKLNP  60
   61 EQVSLFRMAE RDKVDKQLDH YVNQCLRMKM KCEKLVIENE NVVDGLVELI NLHGVTKLVI 120
  121 SAAPDRNYSR KMDKPASRTA TEIMQRADPS CKIWFVCKER LICTSGVEVE IAPGHTPFIP 180
  181 DTGHDALQLT LHQEQDDNNE SELGFYDEIK EACKAADNLM MRALRESYRR QKADEEVVSS 240
  241 LQKAKEYEEL YLEEVKKRKE LEEALLRASE EIAQLKQERD LPKNDQNTTM EEQKEVISDN 300
  301 LILEASGQII KPLQEYLDHD ENCVREPETL LIQRKLAASF SPSSVMQSPF DEDCCIPSYF 360
  361 ICPILQEVMR EPCIASDGFT YETDAIRSWL DGGRRVSPIT GQPIVHQQLI PNLSLRSVIQ 420
  421 DHARRNQYSF S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] PSI-BLAST 19.221849 No description for 2gm3A was found.
    2 View Details [168..431] PSI-BLAST 25.221849 Crystal structure of the CHIP U-box E3 ubiquitin ligase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.298809327772818 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle