Protein Overview: gi|78708515

General Information:
Name(s) found:	gi\|78708515 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|78708515\|gb\|ABB47490.1\| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (japonica cultivar-group)] [NCBI NR] retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
Organism:	Oryza sativa Japonica Group
Length:	1783 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYYVDPYTS VPQYPLYPVY GYPPSTVARQ LGGLGIQGST IMPSSFVDNN VNTSSGQVLP  60
   61 TSTMLVWTQV GEIVCPVYTT MPISTSPPMT GYENAVVTNQ DASTSKDPPV ETENGLLTTS 120
  121 KFVKDSDATR PCPSDTNRRP AKMTSETIRS WCPIHKTKKH TLQDCWVFVN ARAEIRACKE 180
  181 RGIQRTSPTR NVYCPIHKTK NHDLSSCKVL LGAIKTPSPK SYVPVRDNGK EQGATLAPDR 240
  241 FIGVIDLNPH EPSVLHLLED YGSSTSDAAR EVLAIDDVGT LAQANAETAD QSTTPAQHIR 300
  301 AVQAILRETP YDPVLNNDLE RWTERLRASV ANLSNAFEEA ATAAQQNRLP ISDANGEIPE 360
  361 HRESPQRATP PPRGTGDLRD QINGRREARR TRDEANRSRH HVSSRRHDRG SRPHDNRDHD 420
  421 DHDRRGPDNT SHGRRRNDED GGDRRRDNNE RRRQDSRDPG RHPRNRTPEP SDPSSSSSSS 480
  481 ASSSLSDRHP RRSRDHRQPT APSAGCRAFG RSLRDVRWPE RFRPGAIEKY DGSIDPEEFL 540
  541 QVYSTVLYAA GADDNAVANY LPTALKGSAR SWLMHLPPYS ISSWADLWQQ FVANFQGTYK 600
  601 RHAIEDDLHA LTQNSGESLR EYVRRFNECR NTIPEITDAS VIRAFKSGVR DRYTTQELAT 660
  661 RHITTTRRLF QIVERCAHVD DALRRKNDKP KTGGEKKSAA DTSESSKKKN RKNGKRKAQA 720
  721 EVLAAEYANP PRRPDPQGSD TKKSWCPIHK TDRHSLEDCL VFKKSLEKHM AFEKGKRVRV 780
  781 VEKNEESPPH ESDSAYPDSD LHVSHILAGA APKMKWSEQK MEFSEADHPK TAVIPGRYPI 840
  841 VVEPTIRNIK VARVLIDGGS SINLLFASTL EAMGIPQSEL TPTDQPFHGI TPQSSSRPLG 900
  901 KITLPVTFGQ ANNFRTEQIT FDVAEFDTAY NAIIGRTALA KFVAASHYAY QVLKMPGPKG 960
  961 TITIQGNAKL AVQCDKRSLD MVEQTPTPPA TSEPPKKELA LIAFLRDNAD VFAWQPSDMP1020
 1021 GVPREVIEHK LMVRPDAKPV KQRLRRFAPD RKQAIREELD KLLKAGFIRE VLHPEWLANP1080
 1081 VIVRKANGKW RMCVDFTDLN KACPKDHFPL PRIDQLVYST AGCELLSFLD AYSGYHQISM1140
 1141 VKEDEEKTAF ITPFGVFCHV KMPFGLITAG NTFQRTAYVD GIVVKTKTSD SLIDDLRETF1200
 1201 DNLRRYRLML NPEKCTFGVP SGKLLGFLVS GRGIEANPEK IKAIENMKSP TRLKEVQKLT1260
 1261 GYMAALSRFV ARIGEQGQPF FALLKKQDKF VWTQETKEAF ITLKRYLSNP PVLVAPQPNE1320
 1321 ELFLYIAATP HSVSIVIVVE REKVQRPVYY VSEALHDAKT RYPQIQKLLY AIIMTSRKLR1380
 1381 HYFQAHRVTI VSSFPLGEVV RNKDVVGRIA KWVVELSQFD VHFMPQTAIK SQVLADFVAD1440
 1441 WTMPDNKSDN QGDNETWTMA FDGALNSQGA GAGLILTSPS GDQFKHAIHL NFRATNNTAE1500
 1501 YEGLLAGIRA AAALGVKRLI VKGDSELVAN QVHKDYKCSN PELSKYLAEV RKLEKRFDGI1560
 1561 EVRHVYRKDN VEPDDLARRA SRREPLEPDT FLDVLTKPSV KEVSGEVVPS TPDISSDVIE1620
 1621 VERAVADIET TDDWRTPLIK FINSEELPEN DTEAEKITRK AKIYCMIGND LYKKVPNGIL1680
 1681 LKCVSIDDGR QLLLDIHEGI CGSHAVGRTL VGKAFRQGFF WPTALKDACD MVQRCEACQF1740
 1741 HSKHTKLPAQ ALQTIPLTWP FSCWGLDILG PFPRGQSGYK FLL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.94

Protein Overview: gi|78708515

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: