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Protein Overview: gi|78070714, gi|...

General Information:
Name(s) found: gi|78070714 [NCBI NR]
gi|119626688 [NCBI NR]
gi|119626687 [NCBI NR]
Description(s) found:
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  • gi|78070714|gb|AAI07710.1| LARP7 protein [Homo sapiens] [NCBI NR]
  • gi|119626688|gb|EAX06283.1| HDCMA18P protein, isoform CRA_a [Homo sapiens] [NCBI NR]
  • gi|119626687|gb|EAX06282.1| HDCMA18P protein, isoform CRA_a [Homo sapiens] [NCBI NR]
  • Tax_Id=9606 HDCMA18P protein [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • LARP7 protein [Homo sapiens] [NCBI-RefSeq_human_na_05-03-2007_con_reversed.fasta]
  • HDCMA18P protein, isoform CRA_a [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 LARP7 protein [EBI-IPI_human_3.23_11-02-2006_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=LARP7 Isoform 2 of La-related protein 7 [human-ipi-250309-contam.fasta]
  • IPI:IPI00395536.3|SWISS-PROT:Q4G0J3-2 Tax_Id=9606 Gene_Symbol=LARP7 Isoform 2 of La-related protein 7 [ipi.HUMAN.fasta.20090807]
  • Isoform 2 of La-related protein 7 OS=Homo sapiens GN=LARP7 [011711_HMR.fasta]
  • Isoform 2 of La-related protein 7 GN=LARP7 [Doctor+uniprot-HUMAN-120911.fasta]
  • HDCMA18P protein, isoform CRA_a OS=Homo sapiens GN=HDCMA18P PE=4 SV=1 [uniprot-human-031015-contam.fasta]
  • Isoform of Q4G0J3, Isoform 2 of La-related protein 7 OS=Homo sapiens GN=LARP7 [2016-04-human-contam-aPKC-His-Par6.fasta]
    • Organism: Homo sapiens
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEVIPLRV LSKSEWMDLK KEYLALQKAS MASLKKTISQ IKSESEMETD SGVPQNTGMK  60
   61 NEKTANREEC RTQEKVNATG PQFVSGVIVK IISTEPLPGR KQVRDTLAAI SEVLYVDLLE 120
  121 GDTECHARFK TPEDAQAVIN AYTEINKKHC WKLEILSGDH EQRYWQKILV DRQAKLNQPR 180
  181 EKKRGTEKLI TKAEKIRLAK TQQASKHIRF SEYD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] PSI-BLAST 5.522879 Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen
    2 View Details [80..214] PSI-BLAST 28.522879 Lupus LA protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle