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Protein Overview: CE39380

General Information:
Name(s) found: CE39380 [WormBase]
Description(s) found:
Found 11 descriptions.
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  • WBGene00019123 status:Predicted UniProt:O01898 protein_id:CCD64974.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 412 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: ionotropic glutamate receptor activity [IEALink to PubMed article]
    extracellular-glutamate-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGDIQKGRI DMACGRFRMT ADRANVLTFT YPTQFEVNQV YLITDPQKSV DVVFLFHPFS  60
   61 TTVWLLLSLT VLVVAIVFFI LRFVEFKSTK ETESSYECIQ NSIFQVLLST FNLEIRVAKK 120
  121 STFFAFHLFS TIWLLAWFHV FIDFYTSELS GMMVVSDKRQ VPFDNFYGFI DHLRKGNYRL 180
  181 FTPSADRIPE CPHEITTSKC NAIFSEILSK HPPEYGDLMQ LNDREFVSSR KIPLVGFGWY 240
  241 PAQRISSKFS IWTEELFHSD IWLIRDFPVC PAAYIVRPTF PYLDELNEMI IKRIDNHYTP 300
  301 AYPELTLTGK PSKSSFSLNQ LSSIFLIHLL GAFVSTLFLI AELVIGKTDF LTHIVVFYRT 360
  361 LNLDYGKIFF FPINVSSSYG SYFSAELTKR HNIDSTLQTR LDNSKSLKME NG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] PSI-BLAST 8.39794 Glutamine-binding protein
    2 View Details [93..155] deduced N/A No confident structure predictions are available.
    3 View Details [156..347] PSI-BLAST 18.69897 Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
    4 View Details [348..412] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.144254316055515 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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