YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: pqn-27

General Information:
Name(s) found: pqn-27 / CE40553 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00004116 locus:pqn-27 status:Confirmed UniProt:O02238 protein_id:CAB05716.2 [WormBase]
  • gi|133904271|ref|NP_496833.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-27) [Caenorhabditis elegans] [NCBI NR]
  • gi|118142306|emb|CAB05716.2| C. elegans protein E01G4.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE40553 WBGene00004116 locus:pqn-27 status:Partially_confirmed UniProt:O02238_CAEEL protein_id:CAB05716.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE40553 WBGene00004116 locus:pqn-27 status:Partially_confirmed UniProt:O02238_CAEEL protein_id:CAB05716.2| [wormORF-contam.fasta]
  • [wormORF-contam.fasta]
  • Hypothetical protein E01G4.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE40553 WBGene00004116 locus:pqn-27 status:Partially_confirmed TR:O02238 protein_id:CAB05716.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE40553 WBGene00004116 locus:pqn-27 status:Partially_confirmed UniProt:O02238 protein_id:CAB05716.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE40553 WBGene00004116 locus:pqn-27 status:Confirmed UniProt:O02238 protein_id:CAB05716.2 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Prion-like-(Q/N-rich)-domain-bearing protein OS=Caenorhabditis elegans GN=pqn-27 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 534 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA metabolic process [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGNWQYNN WNRPGQPPAQ QNQDDLYQNP QAGYGYNNQQ QQQQGRPQQY AGYPPQRQQQ  60
   61 QYNMNAYAPR QQQQQQYQQQ QQNYMMQHQQ QHQQQHHYHQ QQQQQFMFNA NANVFVPRGH 120
  121 AQQPPAEYGF YNGPPVHQQH YQQQQQHYGA ATSAPSSSYN VMYQQQEDTG IDAFAQFGQQ 180
  181 SQQYHPSPEL SEQINASKCS PYLTEILVGC EQLIAEGEED SPTWISAIRQ RFEDPQMDEV 240
  241 SKKIGVKLII EMAFTMEPNQ FRTADPQNTF SNLLKTLSYE VKDFLRVFIV PTLGEYHEGR 300
  301 KQLENDSRVY MAVFYAEVFV KLTLDNGSRF DKIGAALADQ IEEILKFQPK DEYMKCLLRA 360
  361 FKVAGAELDT SEDLKLRADH ILTIMGGYAK GSPLLGDSVK AQIFSLIECR TRGWDRAAAR 420
  421 GPVRSSAGAG GGGGCVADRG EHDSSFDDST DNDLTEEERQ FLESHLEQVE SRRGAEEDYD 480
  481 EQEMMKEFGK FVKEELQQAE LKSTSEMLQK LEIEKDTAGA ATETDETTPK TEEK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..154] MSA 8.076997 View MSA. No confident structure predictions are available.
    2 View Details [155..424] PSI-BLAST 69.69897 Eukaryotic initiation factor eIF4G
    3 View Details [425..534] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.29040336175225 bayes_pls_golite062009
  • protein binding
    		•  1.041337870941 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle