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Protein Overview: pcs-1

General Information:
Name(s) found: pcs-1 / CE40964 [WormBase]
Description(s) found:
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  • WBGene00003960 locus:pcs-1 status:Confirmed UniProt:A5JYS0 protein_id:CAN86618.1 [WormBase]
  • gi|193204635|ref|NP_001122615.1| PhytoChelatin Synthase family member (pcs-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|148472662|emb|CAN86618.1| C. elegans protein F54D5.1a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE40964 WBGene00003960 locus:pcs-1 phytochelatin synthase status:Confirmed UniProt:A5JYS0_CAEEL protein_id:CAN86618.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE40964 WBGene00003960 locus:pcs-1 phytochelatin synthase status:Confirmed UniProt:A5JYS0_CAEEL protein_id:CAN86618.1| [wormORF-contam.fasta]
  • [wormORF-contam.fasta]
  • CE40964 WBGene00003960 locus:pcs-1 phytochelatin synthase status:Confirmed TR:A5JYS0 protein_id:CAN86618.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE40964 WBGene00003960 locus:pcs-1 phytochelatin synthase status:Confirmed UniProt:A5JYS0 protein_id:CAN86618.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE40964 WBGene00003960 locus:pcs-1 status:Confirmed UniProt:A5JYS0 protein_id:CAN86618.1 [wormpep246-ecoli-contam.fasta]
  • PhytoChelatin Synthase OS=Caenorhabditis elegans GN=pcs-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 426 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to stress [IMPLink to PubMed article]
    Molecular Function: glutathione gamma-glutamylcysteinyltransferase activity [IDA][IEALink to PubMed article]
    metal ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRRHFKMS VTAKNFYRRP LPETCIEFSS ELGKKLFTEA LVRGSANIYF KLASQFRTQD  60
   61 EPAYCGLSTL VMVLNALEVD PEKVWKAPWR FYHESMLDCC VPLENIRKSG INLQQFSCLA 120
  121 KCNRLKSTVS YGDNSPDFLK KFRTSLVNSV RSDDQVLVAS YDRSVLGQTG SGHFSPLAAY 180
  181 HEDSDQVLIM DVARFKYPPH WVKLETLQKA LCSVDVTTKL PRGLVELELK KGTRPLIMYG 240
  241 LKAYVNINDS DFATSVISWN QFLLCDPLED DEEEFQLCCR KFGQCFAPHA MCCTQKTFDA 300
  301 DQKNSCTECS TDQNEACKMI CSEIRRTRFA EVFSSSAVAA LLIAWPFEKG YSERSDRIGN 360
  361 LAEKYKNEFS AETMNEMNQL TTQIRTLISC SKPPVVININ KPDATSNKCC KNKIGQSCAC 420
  421 ANDVNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] PSI-BLAST 75.0 Crystal structure of Alr0975
    2 View Details [235..426] MSA 1.014985 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.529663942126259 bayes_pls_golite062009
  • hydrolase activity
    		•  0.16837900182603 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle