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Protein Overview: CE40959

General Information:
Name(s) found: CE40959 [WormBase]
Description(s) found:
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  • WBGene00009665 locus:lmd-1 status:Confirmed UniProt:A5JYU6 protein_id:CAN86920.1 [WormBase]
  • gi|193202779|ref|NP_001122475.1| hypothetical protein F43G9.2 [Caenorhabditis elegans] [NCBI NR]
  • gi|148472889|emb|CAN86920.1| C. elegans protein F43G9.2a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE40959 WBGene00009665 status:Partially_confirmed UniProt:A5JYU6_CAEEL protein_id:CAN86920.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • [wormORF-contam.fasta]
  • CE40959 WBGene00009665 status:Partially_confirmed UniProt:A5JYU6_CAEEL protein_id:CAN86920.1| [wormORF-contam.fasta]
  • CE40959 WBGene00009665 status:Partially_confirmed TR:A5JYU6 protein_id:CAN86920.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE40959 WBGene00009665 status:Confirmed UniProt:A5JYU6 protein_id:CAN86920.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE40959 WBGene00009665 locus:lmd-1 status:Confirmed UniProt:A5JYU6 protein_id:CAN86920.1 [wormpep246-ecoli-contam.fasta]
  • LysM Domain (Peptidoglycan binding) protein OS=Caenorhabditis elegans GN=lmd-1 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 209 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: cell wall macromolecule catabolic process [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKEGSSVE QFAMRSRAAR TSSSEGFQND MPTYKDVVFI ERKVKNGDTL NKLAIKYQVN  60
   61 VAEIKRVNNM VSEQDFMALS KVKIPVSRMR MALGVQSALS QDEEDEILID IDDRTALLRE 120
  121 DRGSRDPSVE DIFHKTDTNI AQVREALPEE SHGVTGFHFV TARAPTSSSI SVWMVVLGVL 180
  181 LIFCVLPLVL TFYEEQEEAA HQHKTTHAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 10.69897 No description for 2djpA was found.
    2 View Details [118..209] MSA 3.57998 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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