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Protein Overview: CE39548

General Information:
Name(s) found: CE39548 [WormBase]
Description(s) found:
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  • WBGene00015092 locus:mrpl-47 status:Confirmed UniProt:Q2L6V1 protein_id:CCD61572.1 [WormBase]
  • gi|85662590|gb|ABC71840.1| Hypothetical protein B0261.4b [Caenorhabditis elegans] [NCBI NR]
  • gi|115532238|ref|NP_001040633.1| hypothetical protein B0261.4 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE39548 WBGene00015092 status:Confirmed UniProt:Q2L6V1_CAEEL protein_id:ABC71840.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE39548 WBGene00015092 status:Confirmed UniProt:Q2L6V1_CAEEL protein_id:ABC71840.1| [wormORF-contam.fasta]
  • CE39548 WBGene00015092 status:Confirmed TR:Q2L6V1 protein_id:ABC71840.1 [wormpep160-contam.fasta]
  • B0261.4b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein B0261.4b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE39548 WBGene00015092 status:Confirmed UniProt:Q2L6V1 protein_id:ABC71840.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE39548 WBGene00015092 locus:mrpl-47 status:Confirmed UniProt:Q2L6V1 protein_id:CCD61572.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of Q2L6V2, Mitochondrial Ribosomal Protein, Large OS=Caenorhabditis elegans GN=mrpl-47 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 216 amino acids

    Gene Ontology:
    Cellular Component: mitochondrial ribosome [IEALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRSLPSLVS SAVRSQNAVN TRFSSTMKQF FDDEANFGKA ELRPKHRPGR SWTAEELRLK  60
   61 SNSDLHKLWY VCLKERNMLI TMKKAHTSRA RNMPNPERLD RVHETMDRIE SVVHERNDAV 120
  121 FRLETGESAA PRKRTITSFA GFTYQKQATE HFAPPQLGQK EYETPYLDDD AYVMQKLWQE 180
  181 KEFMKNRDRL DDEKRRAART EDMDRFKRGA PRVFNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] FFAS03 1.29 70S ribosome functional complex
    2 View Details [136..216] MSA 1.035992 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  4.70571586133606 bayes_pls_golite062009
  • structural molecule activity
    		•  4.5930470522379 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle