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Protein Overview: RH42_ORYSJ

General Information:
Name(s) found: RH42_ORYSJ [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 1049 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSDEAGSS KHHRRDKEKD RERSSSRHHR DRDRERSSSR HHHREDRDDD RDRDRDRERR  60
   61 HREKERDREE RKAREREERE KEKERERARR REERDREERS RRREAAAEEE EEDVDRDRKR 120
  121 RRRSSHHHHH HRDAEPEGPA SGAREEEVVD VEEAERRRQK KKEEEQKQLD EEMETRRRRI 180
  181 KEWQEMKRRE EETKRREQEE AGVGTSAAAA AAPAEAEDGG NAGKKWTLDG EESDEEGNQE 240
  241 DGKKSDDNGG SGAGAMDVDV PNGGDNANGA NAMDEDEIDP LDAFMNSMVL PEVAKLESMP 300
  301 AANVDDKNDK SAKDAVTNGD KKGPKKVMGR IIQGEDSDSD YADDEDDEGG SEDEDDEEFM 360
  361 KRVKKTKAEK LAIVDHSKID YQPFRKNFYI EVKDITKMAA EEVAAYRKQL ELKVHGKDVP 420
  421 KPIKTWVQSG LTSKLLDTIK KLGFEKPMSI QAQALPIIMS GRDCIGIAKT GSGKTLAFVL 480
  481 PMLRHVKDQP AVVPGDGPIG LIMAPTRELV VQIHSDIKKF SKALGINCVA IYGGSGVAQQ 540
  541 ISELKRGAEI VVCTPGRMID ILCTSSGKIT NLRRVTFLVM DEADRMFDMG FEPQITRIVQ 600
  601 NTRPDRQTVL FSATFPRQVE ILARKVLTKP VEIQVGGRSV VNKDITQLVE VRPENERFFR 660
  661 LLELLGEWFD KGKILVFVHS QDKCDSLLKD LFQHGYPCLS LHGGKDQTDR ESTLADFKSN 720
  721 VCSLLIATSV AARGLDVKEL ELVVNYDVPN HYEDYVHRVG RTGRAGRKGF AVTFISEEEE 780
  781 RYAPDLVKAL ELSEQAVPED LKGLADRFMA KVKQGTEQAH GTGYGGSGFK FNEEEDEARK 840
  841 SAKKAQAREY GYEEDKSDSD SDEEGGVRKA GGDLAAQAIA AAQAAAAMVA AKAASNANQQ 900
  901 TQGTSVGPLL PLAIASNTQN NEATARALQA AFNIQQNLAR IQAHAVPEHY EAELEINDFP 960
  961 QNARWKITHK ETLGPIQEWT GAAITTRGTF FPQGKIVGAN ERKLYLFIEG PTELSVKKAK1020
 1021 AELKRVLEDC ANHALNLPGS AQTGKYSVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..209] MSA 2.159996 View MSA. No confident structure predictions are available.
    2 View Details [210..369] deduced N/A No confident structure predictions are available.
    3 View Details [370..431] PSI-BLAST 109.0 No description for 2db3A was found.
    4 View Details [432..629] PSI-BLAST 15.0 No description for 3b6eA was found.
    5 View Details [630..850] PSI-BLAST 42.09691 No description for 2jgnA was found.
    6 View Details [851..955] deduced N/A No confident structure predictions are available.
    7 View Details [956..1049] MSA 1.428994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle