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Protein Overview: PABN1_ARATH

General Information:
Name(s) found: PABN1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|21358850|gb|AAM47151.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|19310785|gb|AAL85123.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18423239|ref|NP_568751.1| PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15982733|gb|AAL09819.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15809838|gb|AAL06847.1| AT5g51120/MWD22_6 [Arabidopsis thaliana] [NCBI NR]
  • Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|19310785|gb|AAL85123.1| unknown protein [Arabidopsis thaliana]gi|15982733|gb|AAL09819.1| unknown protein [Arabidopsis thaliana]gi|15809838|gb|AAL06847.1| AT5g51120/MWD22_6 [Arabidopsis thaliana]gi|18423239|ref| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polyadenylate-binding protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PABN1, ATPABN1 | ATPABN1/PABN1 (polyadenylate-binding protein 1); RNA binding / poly(A) binding / protein binding | chr5:20796986-20798467 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g51120/MWD22_6 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PABN1, ATPABN1 | polyadenylate-binding protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g51120/MWD22_6 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 227 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: RNA binding [ISS]
    protein binding [IPI]
    poly(A) RNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR  60
   61 IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV DSRSIYVGNV DYACTPEEVQ 120
  121 QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN 180
  181 VPGMRQFRGR GRPFRPMRGF MPGVPFYPPY AYGRVPRFRR PMRYRPY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] PSI-BLAST 40.154902 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle