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Protein Overview: SWC4_ARATH

General Information:
Name(s) found: SWC4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30690620|ref|NP_850470.1| myb family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|225898605|dbj|BAH30433.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20465555|gb|AAM20260.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17381136|gb|AAL36380.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • SWR1-complex protein 4 OS=Arabidopsis thaliana GN=SWC4 PE=1 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|17381136|gb|AAL36380.1| unknown protein [Arabidopsis thaliana]gi|30690620|ref|NP_850470.1| myb family transcription factor [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | myb family transcription factor | chr2:19386109-19389274 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | myb-like transcription factor family protein | chr2:19379039-19382204 FORWARD LENGTH=441 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • DNA methyltransferase 1-associated protein 1 OS=Arabidopsis thaliana GN=At2g47210 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 441 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [IEA][ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGTDAKDIL GLPKTPLSLT QEKKSRPQKE SHRKPDGISR EVYALTGGVA PLMPSIDLKR  60
   61 RPPADEKVAW KWLSFTNSAR KDDLQLYHWV RVVNDVPPTG DYSFAKYNKS VDILKYTDEE 120
  121 YENHLTDSVW TKEETDQLFE FCQNFDLRFV VIADRFPVSR TVEELKDRYY SVNRALLRAR 180
  181 AQSPADVANH PLMKEPYDIT RDRERKRALS MVLSQSRHQE KKDAEILAEA KRITEMRLAA 240
  241 RRAEEPDVSA NENAGLDKAD GVVPGRSVSP TSNSQLPATA VAPSTLTMAD YASTLASLRM 300
  301 LHVYLRTYGL EQMVQAASSA VGLRTIKRVE QTLQDLGVNL KPKVPTKTVC DEHLELRKEI 360
  361 LTLLNLQKQL QYKESEGSSH REGSYAAMPD TPKDRVFAPD PFSFGAERPI KKEQKRKGPG 420
  421 RQADTPSPAH KRPRKLKASD L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] FFAS03 1.5 CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
    2 View Details deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle