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Protein Overview: URED_ARATH

General Information:
Name(s) found: URED_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|31096381|emb|CAC85462.1| putative urease accessory protein D [Arabidopsis thaliana] [NCBI NR]
  • gi|30686277|ref|NP_850239.1| URED (urease accessory protein D); nickel ion binding [Arabidopsis thaliana] [NCBI NR]
  • Urease accessory protein D OS=Arabidopsis thaliana GN=URED PE=2 SV=1 [Swiss-Prot]
  • putative urease accessory protein D [Arabidopsis thaliana]gi|30686277|ref|NP_850239.1| urease accessory family protein (URED) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Urease accessory family protein (URED) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: URED | URED (urease accessory protein D); nickel ion binding | chr2:14770466-14772124 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nickel ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative urease accessory protein D [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: URED | urease accessory protein D | chr2:14763387-14765045 REVERSE LENGTH=294 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative urease accessory protein D OS=Arabidopsis thaliana GN=ureD PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 294 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: nitrogen compound metabolic process [IMP][ISS]
    positive regulation of metalloenzyme activity [IMP]
    Molecular Function: nickel ion binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGKVVVEK VGGRSTATSC FSKYPLKFLL PSKAAPAGTD VVWIYSITYG GGIVSGDSIS  60
   61 CEFTIGDGCT AVITTQSSTK VYKAIGSKCS EQILEARIGS EALLVVIPDP VTCFSTARYY 120
  121 QKQIFRLLSD SNLVLVDWIT SGRHANGEKW DFEFYKSINN VYLEDDHPLF LDTVLLEKRS 180
  181 IQSIAERMQD YQAIAMVILF GAKLKEIQKQ VQENVKNMMS EQLQLSYSSR RHKSESSSRN 240
  241 RFMKPEFIAS CSTFGPEGKG VVVRIASDST ESVYNFLRQQ LAELEPVLGQ APYA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] MSA 4.158987 View MSA. No confident structure predictions are available.
    2 View Details [86..294] MSA 5.159995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle