YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RBFA_ECOLI

General Information:
Name(s) found: RBFA_ECOLI [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • pir||Q9EC15 ribosome-binding factor rbfA - Escherichia coli (strain K-12) [NCBI NR]
  • gi|67471971|sp|P0A7G2.2|RBFA_ECOLI RecName: Full=Ribosome-binding factor A; AltName: Full=Protein P15B [NCBI NR]
  • gi|606107|gb|AAA57970.1| P15B [Escherichia coli] [NCBI NR]
  • gi|42222|emb|CAA31634.1| unnamed protein product [Escherichia coli] [NCBI NR]
  • gi|42218|emb|CAA32020.1| P15B gene product (AA 1 - 133) [Escherichia coli] [NCBI NR]
  • pir||C85980 ribosome-binding factor A [imported] - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • pir||H91134 ribosome-binding factor A [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • gi|209758356|gb|ACI77490.1| ribosome-binding factor A [Escherichia coli] [NCBI NR]
  • gi|209758354|gb|ACI77489.1| ribosome-binding factor A [Escherichia coli] [NCBI NR]
  • gi|209758352|gb|ACI77488.1| ribosome-binding factor A [Escherichia coli] [NCBI NR]
  • gi|209758350|gb|ACI77487.1| ribosome-binding factor A [Escherichia coli] [NCBI NR]
  • gi|209758348|gb|ACI77486.1| ribosome-binding factor A [Escherichia coli] [NCBI NR]
  • Ribosome-binding factor A (Protein P15B) - Escherichia coli [Swiss-Prot]
  • ribosome-binding factor A; ribosome-binding factor, role in processing of 10S rRNA [Escherichia coli K12]gi|15833302|ref|NP_312075.1| ribosome-binding factor A [Escherichia coli O157:H7]gi|30064507|ref|NP_838678.1| ribosome-binding factor A [Shigella fl [nrdb_11152004_Chlamydomonas]
  • Ribosome-binding factor A (Protein P15B) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • unnamed protein product [Escherichia coli] [nr-271106-contam.fasta]
  • P15B gene product (AA 1 - 133) [Escherichia coli] [nr-271106-contam.fasta]
  • Ribosome-binding factor A OS=Escherichia coli (strain K12) GN=rbfA PE=1 SV=2 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 133 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEFGRPQR VAQEMQKEIA LILQREIKDP RLGMMTTVSG VEMSRDLAYA KVYVTFLNDK  60
   61 DEDAVKAGIK ALQEASGFIR SLLGKAMRLR IVPELTFFYD NSLVEGMRMS NLVTSVVKHD 120
  121 EERRVNPDDS KED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] PSI-BLAST 37.69897 Ribosome-binding factor A, RbfA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  1.78763405231681 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.83586229977035 bayes_pls_golite062009
  • catalytic activity
    		•  0.640244199484628 bayes_pls_golite062009
  • binding
    		•  0.519389427071401 bayes_pls_golite062009
  • rRNA binding
    		•  0.22053492547658 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle