Protein Overview: gi|114677908, gi...

General Information:
Name(s) found:	gi\|55649427 [NCBI NR] gi\|114677912 [NCBI NR] gi\|114677910 [NCBI NR] gi\|114677908 [NCBI NR] gi\|114677906 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|55649427\|ref\|XP_512755.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 5 [Pan troglodytes] [NCBI NR] gi\|114677912\|ref\|XP_001166252.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 4 [Pan troglodytes] [NCBI NR] gi\|114677910\|ref\|XP_001166224.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 3 [Pan troglodytes] [NCBI NR] gi\|114677908\|ref\|XP_001166194.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 2 [Pan troglodytes] [NCBI NR] gi\|114677906\|ref\|XP_001166157.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 1 [Pan troglodytes] [NCBI NR] PREDICTED: hypothetical protein XP_512755 [Pan troglodytes]gi\|27676406\|ref\|XP_214847.1\| similar to Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2) [Rattus norvegicus]gi\|30109280\|gb\|AAH51208.1\| Similar to Small nuclear ribonucleopro [nrdb_11152004_Chlamydomonas] [chimp_Ens_120109_contam.fas] PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 3 [Pan troglodytes] [nr-271106-contam.fasta] PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 1 [Pan troglodytes] [nr-271106-contam.fasta] PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 5 [Pan troglodytes] [nr-271106-contam.fasta] PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 2 [Pan troglodytes] [nr-271106-contam.fasta] PREDICTED: small nuclear ribonucleoprotein polypeptide D2 isoform 4 [Pan troglodytes] [nr-271106-contam.fasta]
Organism:	Pan troglodytes
Length:	118 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MSLLNKPKSE MTPEELQKRE EEEFNTGPLS VLTQSVKNNT QVLINCRNNK KLLGRVKAFD 60 61 RHCNMVLENV KEMWTEVPKS GKGKKKSKPV NKDRYISKMF LRGDSVIVVL RNPLIAGK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..118]	PSI-BLAST	30.69897	D2 core SNRNP protein

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle