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Protein Overview: gi|7494451, gi|9...

General Information:
Name(s) found: gi|9964089 [NCBI NR]
gi|7494451 [NCBI NR]
Description(s) found:
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  • gi|9964089|gb|AAG09818.1|AF279661_1 2C-Methyl-D-erythritol 2,4-cyclodiphosphate synthase [Plasmodium falciparum] [NCBI NR]
  • gi|7494451|pir||B71615 YgbB protein, 1st euk. member (OO, TP) PFB0420w - malaria parasite (Plasmodium falciparum) [NCBI NR]
  • 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Plasmodium falciparum 3D7]gi|3845180|gb|AAC71873.1| 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Plasmodium falciparum 3D7]gi|9964089|gb|AAG09818.1| 2C-Methyl-D-erythritol 2,4-cyclodiphospha [nrdb_11152004_Chlamydomonas]
  • 2C-Methyl-D-erythritol 2,4-cyclodiphosphate synthase [Plasmodium falciparum] [nr-271106-contam.fasta]
  • YgbB protein, 1st euk. member (OO, TP) PFB0420w - malaria parasite (Plasmodium falciparum) [nr-271106-contam.fasta]
    • Organism: Plasmodium falciparum
    Length: 240 amino acids

    Gene Ontology:
    Cellular Component: apicoplast [IDALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLKGYTSNV VLIILTFFIL LTKEEKNIKN NISGYCFLNF GLKKNAIIKK REKQNLKLFC  60
   61 YNGIRIGQGY DIHKIKVLDE EYNTYANNDF NKNEQSFKTL TLGGVKINNV LVLSHSDGDI 120
  121 IYHSIVDSIL GALGSLDIGT LFPDKDEKNK NKNSAIFLRY ARLLIYKKNY DIGNVDINVI 180
  181 AQVPKISNIR KNIIKNISTV LNIDESQISV KGKTHEKLGV IGEKKAIECF ANILLIPKNS 240
  241

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] PSI-BLAST 69.221849 Crystal structure of a 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
    		•  5.90222038729348 bayes_pls_golite062009
  • phosphorus-oxygen lyase activity
    		•  3.82238498158628 bayes_pls_golite062009
  • catalytic activity
    		•  1.89592759292365 bayes_pls_golite062009
  • 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
    		•  1.55973202658962 bayes_pls_golite062009
  • lyase activity
    		•  1.47817320758946 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.53

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle