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Protein Overview: gi|16504793, gi|...

General Information:
Name(s) found: gi|25288590 [NCBI NR]
gi|16504793 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|25288590|pir||AB0958 DNA polymerase III beta-chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) [NCBI NR]
  • gi|16504793|emb|CAD03158.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhi] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi
    Length: 366 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTVEREHL LKPLQQVSGP LGGRPTLPIL GNLLLQVADG TLSLTGTDLE MEMVARVTLS  60
   61 QPHEPGATTV PARKFFDICR GLPEGAEIAV QLEGDRMLVR SGRSRFSLST LPAADFPNLD 120
  121 DWQSEVEFTL PQATMKRLIE ATQFSMAHQD VRYYLNGMLF ETEGSELRTV ATDGHRLAVC 180
  181 SMPLEASLPS HSVIVPRKGV IELMRMLDGG ENPLRVQIGS NNIRAHVGDF IFTSKLVDGR 240
  241 FPDYRRVLPK NPDKHLEAGC DILKQAFARA AILSNEKFRG VRLYVSENQL KITANNPEQE 300
  301 EAEEILDVSY GGTEMEIGFN VSYVLDVLNA LKCETVRIML TDSVSSVQIE DAASQSAAYV 360
  361 VMPMRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..366] PSI-BLAST 133.0 E. COLI DNA POLYMERASE BETA SUBUNIT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  10.1355867012964 bayes_pls_golite062009
  • DNA polymerase activity
    		•  10.0862166288891 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.50006430161592 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.53479307306028 bayes_pls_golite062009
  • transferase activity
    		•  2.88122926655527 bayes_pls_golite062009
  • binding
    		•  0.65029295764999 bayes_pls_golite062009
  • DNA polymerase processivity factor activity
    		•  0.616404933041 bayes_pls_golite062009
  • catalytic activity
    		•  0.48077242755678 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.4343174930339 bayes_pls_golite062009
  • DNA binding
    		•  0.129085697705275 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle