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Protein Overview: gi|29143801, gi|...

General Information:
Name(s) found: gi|29143801 [NCBI NR]
gi|29139436 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|29143801|ref|NP_807143.1| vitamin B12/cobalamin outer membrane transporter [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29139436|gb|AAO71003.1| vitamin B12 receptor protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 614 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKATLLTA FSVTAFSAWA QDTSPDTLVV TANRFQQPRS AVLAPVTIVT RQDIERWQST  60
   61 SVNDVLRRLP GVDIAQSGGT GQNSSIFIRG TNSSHVLVLI DGVRLNLAGV SGSADLSQFP 120
  121 VSLVQRIEYI RGPRSAIYGS DAIGGVVNII TTRDNPGTEL TAGWGSNSYQ NYDLSTQQQL 180
  181 GENTRATLIG DYEYTKGFDV VAKGGTGMQA QPDRDGFLSK TLYGALEHTF SDRWSGFVRG 240
  241 YGYDNRTDYD AYYSPGSPLI DTRKLYSQSW DAGLRFNGER IQSQLVSSYS HSKDYNYDPH 300
  301 YGRYDTSATL DEMKQYNVQW TNSVVVGHGN VGAGVDWQKQ TTTPGTGYVP EGYDQRNTGV 360
  361 YLTGLQQLGD FTLEAAARSD DNSQFGRHGT WQTSAGWEFI EGYRFIASYG TSYKAPNLGQ 420
  421 LYGYYGNPNL NPEKSKQWEG AFEGLTAGVS WRISGYRNDI NDMIDYDDHL QKYYNEGKAR 480
  481 IKGIEATANF DTGPLTHTVS YDYVDARNAI TDTPLPRRSK QMAKYQLDWD VYDFDWGVTY 540
  541 QYLGSRYDSD YSAYPYRTVK MGGVSLWDLT VAYPVTSHLT VRGKIANLFD KDYETVYGYQ 600
  601 TAGREYTLSG SYTF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..614] PSI-BLAST 83.39794 Outer membrane cobalamin transporter BtuB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.15398171369398 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.43332676180972 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.99898520864149 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.37880749517427 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.9810521942815 bayes_pls_golite062009
  • cobalamin binding
    		•  0.937576452004179 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.89213734347785 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.70757821289609 bayes_pls_golite062009
  • binding
    		•  0.643879907209189 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  0.60516455096546 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  0.17491456011246 bayes_pls_golite062009
  • lipid transporter activity
    		•  0.10911346172326 bayes_pls_golite062009
  • protein binding
    		•  0.0112080975548029 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle