YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|29143472, gi|...

General Information:
Name(s) found: gi|29143472 [NCBI NR]
gi|29139106 [NCBI NR]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • gi|29143472|ref|NP_806814.1| RNA polymerase sigma factor RpoD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29139106|gb|AAO70674.1| RNA polymerase sigma-70 factor [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 660 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHIVREAPD SRSERQRPKY KYALALNVDS YTVDTNQTNK CGYRLMEQNP QSQLKLLVTR  60
   61 GKEQGYLTYA EVNDHLPEDI VDSDQIEDII QMINDMGIQV MEEAPDADDL LLAENTTSTD 120
  121 EDAEEAAAQV LSSVESEIGR TTDPVRMYMR EMGTVELLTR EGEIDIAKRI EDGINQVQCS 180
  181 VAEYPEAITY LLEQYDRVEA EEARLSDLIT GFVDPNAEEE MAPTATHVGS ELSQEDLDDD 240
  241 EDEDEEDGDD DAADDDNSID PELAREKFAE LRAQYVVTRD TIKAKGRSHA AAQEEILKLS 300
  301 EVFKQFRLVP KQFDYLVNSM RVMMDRVRTQ ERLIMKLCVE QCKMPKKNFI TLFTGNETSE 360
  361 TWFNAAIAMN KPWSEKLHDV AEEVQRCLQK LRQIEEETGL TIEQVKDINR RMSIGEAKAR 420
  421 RAKKEMVEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM KAVDKFEYRR GYKFSTYATW 480
  481 WIRQAITRSI ADQARTIRIP VHMIETINKL NRISRQMLQE MGREPTPEEL AERMLMPEDK 540
  541 IRKVLKIAKE PISMETPIGD DEDSHLGDFI EDTTLELPLD SATTESLRAA THDVLAGLTA 600
  601 REAKVLRMRF GIDMNTDHTL EEVGKQFDVT RERIRQIEAK ALRKLRHPSR SEVLRSFLDD 660
  661

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] FFAS03 2.88 DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
    2 View Details [157..255] PSI-BLAST 62.69897 CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE
    3 View Details [256..660] PSI-BLAST 61.522879 DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle