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Protein Overview: gi|29141401, gi|...

General Information:
Name(s) found: gi|29141401 [NCBI NR]
gi|29137028 [NCBI NR]
Description(s) found:
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  • gi|29141401|ref|NP_804743.1| cytoplasmic alpha-amylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29137028|gb|AAO68592.1| cytoplasmic alpha-amylase [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
  • cytoplasmic alpha-amylase [Salmonella enterica subsp. enterica serovar Typhi Ty2]gi|16760907|ref|NP_456524.1| cytoplasmic alpha-amylase [Salmonella enterica subsp. enterica serovar Typhi str. CT18]gi|29137028|gb|AAO68592.1| cytoplasmic alpha-amylase [Sa [nrdb_11152004_Chlamydomonas]
  • cytoplasmic alpha-amylase [Salmonella enterica subsp. enterica serovar Typhi Ty2] [nr-271106-contam.fasta]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 494 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNPTLLQYF HWYYPDGGKL WSELAERADG LNDIGINMVW LPPACKGASG GYSVGYDSYD  60
   61 LFDLGEFDQK GTIATKYGDK RQLLTAIDAL KKNNIAVLLD VVVNHKMGAD EKERIRVQRV 120
  121 NQDDRTQIDD NIIECEGWTR YTFPARAGQY SNFIWDYHCF SGIDHIENPD EDGIFKIVND 180
  181 YTGDGWNDQV DDELGNFDYL MGENIDFRNH AVTEEIKYWA RWVMEQTHCD GFRLDAVKHI 240
  241 PAWFYKEWIE HVQAVAPKPL FIVAEYWSHE VDKLQTYIDQ ADGKTMLFDA PLQMKFHEAS 300
  301 RQGAEYDMRH IFTGTLVEAD PFHAVTLVAN HDTQLLQALE APVEPWFKPL AYALILLREN 360
  361 GVPSVFYPDL YGASYEDNGE NGETCRVDMP VINQLDRLIL ARQRFAHGIQ TLFFDHPNCI 420
  421 AFSRSGTEEN PGCVVVLSNG DDGEKTLLLG DNYANKTWRD FLGNRSEHVV TNDQGEATFF 480
  481 CNAGSVSVWV IEDV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..494] PSI-BLAST 79.522879 Bacterial alpha-Amylase; Bacterial alpha-amylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, acting on glycosyl bonds
    		•  3.1190602686215 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  2.98773241907716 bayes_pls_golite062009
  • catalytic activity
    		•  2.22613067995402 bayes_pls_golite062009
  • hydrolase activity
    		•  1.107656067558 bayes_pls_golite062009
  • glucosidase activity
    		•  0.58717079348538 bayes_pls_golite062009
  • hexosaminidase activity
    		•  0.16438321606077 bayes_pls_golite062009
  • amylase activity
    		•  0.0914002140078796 bayes_pls_golite062009
  • alpha-amylase activity
    		•  0.0521244165288097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle