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Protein Overview: gi|50940811, gi|...

General Information:
Name(s) found: gi|50940811 [NCBI NR]
gi|50725834 [NCBI NR]
gi|42408462 [NCBI NR]
gi|115474655 [NCBI NR]
gi|113622893 [NCBI NR]
Description(s) found:
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  • gi|50940811|ref|XP_479933.1| putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|50725834|dbj|BAD33364.1| putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|42408462|dbj|BAD09643.1| putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115474655|ref|NP_001060924.1| Os08g0130600 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113622893|dbj|BAF22838.1| Os08g0130600 [Oryza sativa Japonica Group] [NCBI NR]
  • putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein [Oryza sativa (japonica cultivar-group)]gi|42408462|dbj|BAD09643.1| putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protein [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Os08g0130600 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 641 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACLKLGSRA DVFRKQGQDW YCTTGLPSDI TVTVGEQSFH LHKFPLLSKS GLLERCIREK  60
   61 IENGDNSCVI DLSDIPGGAK AFELTAKFCY GVKFEMTASN VVHLRCAAEY LEMTEEIAEG 120
  121 NLIAQTENFL TQTVLRSWKD SIKALHTCDD IIDLAEKLQI VKRCIDSVAT RSCTDPDLFG 180
  181 WPVVQYGGPM QSPGGSVLWN GISTGARPRH SSPDWWYDDV SCLSLPLYKK VISAMEYRGI 240
  241 NQDIIVGSLN HYAKRRLPGL NRRKSISDVS SCLSISSLTS IPSEEEQKYL LEEIDRLLPF 300
  301 QRGVTSCKLL FGLLRTAIIL KASPSCVSNL ERRIGMQLDK ATLEDLLIPN ISESVETLYD 360
  361 VDCVHKILDH FLAMDQETGG ASPGLGEDAQ MLASPSLMPI TMVAKLIDGY LAEVAPDVNL 420
  421 KLPKFRSLAA AIPDYARPID DGLYRAIDIY LKAHPHLSES EKEELCRVMD CQKLSLEACT 480
  481 HAAQNERLPL RVIVQVLFFE QLQLRSSIAE CLMVSENLEG GSRQLIPTIS GEQYRPGWPL 540
  541 ASRENQALRE GMDNMKQRVA DLEKECSTMR DEIERLGRSR STGKGRFSLN MKPQICSTKE 600
  601 AIPTTATTTA TASEEKMAVV KGDTTPRLKL SRHKKKLSIE A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] PSI-BLAST 21.0 No description for 2if5A was found.
    2 View Details [121..302] MSA 3.754991 View MSA. No confident structure predictions are available.
    3 View Details [303..454] MSA 1.159988 View MSA. No confident structure predictions are available.
    4 View Details [455..641] MSA 2.074975 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle