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Protein Overview: gi|30017488, gi|...

General Information:
Name(s) found: gi|34896768 [NCBI NR]
gi|30017488 [NCBI NR]
gi|108709701 [NCBI NR]
Description(s) found:
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  • gi|34896768|ref|NP_909728.1| putative transposon protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|30017488|gb|AAP12910.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|108709701|gb|ABF97496.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • putative transposon protein [Oryza sativa (japonica cultivar-group)]gi|30017488|gb|AAP12910.1| putative transposon protein [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 1657 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRQWMYADR RSKEFINGVH YFLRVAEANR QRGFICCPCN KCKNQKEYSA SRTIHFHLFE  60
   61 SGFMPSYNCW TSHGEQGVEM EEDEVEDDNI PDFAQYVGFE GNQTGEEEIV ADGNDVADDL 120
  121 GQMLQDARED CESEKEAHKL DKMLEDHRTS LYPGCEQGHK KLDTTLELLQ WKAKNGVSDK 180
  181 AFGDLLKLVK NILPGGNKLP ETTYEAKKIV CPLGLEVHKI HACPNDCILY RGEEYENLEA 240
  241 CPVCKALRYK IRRDDPGEVD GQLTKKRIPA KVMWYFPIIP RLRRLFRNKG NARMLRWHAE 300
  301 ERQQDGMLRH PADGSQWRNI DRKFKEFGKD ARNIRFGPKQ PGNDIDVYLR PLVEDLKQLW 360
  361 KKEGVPVWDE DKQEEFNLRA LLFVTINDWP ALSNLSGQSN KGYKACTHCM DETKNTYLKH 420
  421 CRKVVYMGHR RFLAANHPVR KKGKHFEHKA DHRTKPKYRS GKTVFAMVKD VKVVFGKGPG 480
  481 SQHIESEDSH AAMWKKNSIF WELPYWEFLD VRHAIDVMHL TKNLCVNLLG FLGVYGKSKD 540
  541 TLEALVIRGI LPDNVRATIK KLCAFMNAIS QKVIDPDRLE ALQNEVVQCL VSFDLIFPPS 600
  601 FFNIMTHLLC HLVKEIRILG PMYLHNMFPF ERYMGVLKKY VRNRARPEAC IAKGYGTEEV 660
  661 IEFCVEFIED LRPIGVPESR HEGRLRGKGT LGRKAITTVD NNLFRKAHFT VLQHSSLVAP 720
  721 YIEEHLALVR ARNIGKSDAW ITRHHIDTFP AWLRQHLMDN ESINQQLAFL ARGPSGSIAT 780
  781 FQGYEINGYT FYTRAQDMKS TNQNSAVRVD AMGYDGTTAT YYGAIEDIWE LDYGPLKVPL 840
  841 FWCQWVRLTG GGVMIDDSGM TTVDLNKVGY SDEPFVLAND VTQVFFVKDM SSKGKKGRGP 900
  901 DEPKCQVVLP GKRKIVGVED KTDEDYDQLD GQPPFTVTID PSILLSNEDT PYSRNDHKEG 960
  961 TIGTFRPDRD RDEVTLALQT PEHPGRTRGK GVIPWKIGFK EDIHTYRSRM RSKRDTEAKI1020
 1021 ADLEFRVSSY ELNMQEEVAR KVDERMAAHR SHDPQPTIPP AMVSPSGNRS SCASTGQVAS1080
 1081 GMAIPTDPSG TYHCRPIPAG YSKVDVELVE GMYEDLELDY PGGDGETHLR DTCHAIILWR1140
 1141 RRYIILPGRQ AASRAPSPPA PPSPPQDPAP SPPHAPPAPS PPQAPASTPP QDPAPTPPRA1200
 1201 PTPTPPQAPL PAPSKSRAPP APPPAHTRAT KKAKVDAAKN KDPGYDCTQE ELDAYVASEV1260
 1261 KRQFKPRSLE KKIPIYPSVR NFFRGMSASV KEAIKLSDYE RTLKKASSGK SKPVPQLGEQ1320
 1321 PNLEIEPLVT GKEMTIEQFI TDTGLTTDQL LGVAPIEKAE VKYMYELGKP LVKPELLQSL1380
 1381 PTQMYKFHQL YMEMSATGRE MIGARIRDTD FLQGDDILWI NFRGIYELYQ LDALDVSIMS1440
 1441 CWILMEIQRA RRRRVFDTGF IDPRKVNAAM LDQYPQETED NLVHLLKAQH YKTFILLPYN1500
 1501 TEFHWVLLLI DLEACTVNVY DSMDKKESTF DKVFELIDRA WYRFRHLVRG KWRERLRRKF1560
 1561 KFPCAKQKQG TNLCGYYVCE YCHCLADQII TTRELDFIRM RDNLTTHKEF IAAVQEQLMG1620
 1621 FINEEILDPK GEFYYDGNTI HRSLASELAA STTTSKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] MSA 2.226972 View MSA. No confident structure predictions are available.
    2 View Details [118..301] deduced N/A No confident structure predictions are available.
    3 View Details [302..495] Pfam 97.823909 No description for PF02992.6 was found. No confident structure predictions are available.
    4 View Details [496..618] deduced N/A No confident structure predictions are available.
    5 View Details [619..787] MSA 1.264975 View MSA. No confident structure predictions are available.
    6 View Details [788..962] deduced N/A No confident structure predictions are available.
    7 View Details [963..1372] PSI-BLAST 3.30103 No description for 1y0fA was found.
    8 View Details [1373..1657] PSI-BLAST 5.39794 No description for 2iycA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle