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Protein Overview: gi|37532712, gi|...

General Information:
Name(s) found: gi|37532712 [NCBI NR]
gi|31431123 [NCBI NR]
gi|19881702 [NCBI NR]
gi|15217244 [NCBI NR]
Description(s) found:
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  • gi|37532712|ref|NP_920658.1| putative retroelement [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|31431123|gb|AAP52945.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|19881702|gb|AAM01103.1|AC098682_7 Putative retroelement [Oryza sativa] [NCBI NR]
  • gi|15217244|gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa Japonica Group] [NCBI NR]
  • putative retroelement [Oryza sativa (japonica cultivar-group)]gi|31431123|gb|AAP52945.1| putative retroelement [Oryza sativa (japonica cultivar-group)]gi|19881702|gb|AAM01103.1| Putative retroelement [Oryza sativa]gi|15217244|gb|AAK92588.1| Putative re [nrdb_11152004_Chlamydomonas]
  • Putative retroelement [Oryza sativa] [nr-271106-contam.fasta]
  • retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 1777 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHPPNHRG EGMIDFVAEL ARMTLVVGYP NAPEYTTIPP LSGELPHRVR LEVHGYVGTC  60
   61 LANMAVEASG GTADHACQEA AYLMMARIRE RHDYIFHDTA YRYHPRRAHG DGVSSFRPTA 120
  121 GENDTTFGHM CAVMRGLDRM HSDLHKATKA LNDGKLMRIV ALKDEIARLK KENAQLKGLP 180
  181 APGGVRIRTT PRKTTTAPVR IQLAPRNPPP PAAPAAPSVP PAVPAAPAPA PAFTLSFAPA 240
  241 SAARGSASGT GGCLFGMVYT RNGSRATGEG SNGEERADGV HPNSDSGNGP PPLPENPTLA 300
  301 QVMAHQTQMM AAMMQQMQQQ HQQMHQRMMQ HAEQQHQQFG PPPPQSKLPE FLRVRPPTFS 360
  361 STTNPMEAND WLHAIEKKLN LLQCNDQEKV AFATHQLQGP ASAWWDNHMA TRPPGTEVTW 420
  421 AEFCRSFRKA QVPDGVVAQK KREFRALHQG NRTVTEYLHE FNRLARYAPE DVRTDAEKQE 480
  481 KFMAGLDDEL TNQLISGDYA DFERLVDKAI RQEDQRNKMD RKRKAAQFRA HQGSHQRPRF 540
  541 TPGQQGGPTT MIVRQHRPFN PSNFHQGTSG SQNHHGSQPN RGAAPRPSVA PAQSGQPAQA 600
  601 KKETGAKPGS CFNCGELGHF ADKCPKPRRA GPRFIQARVN HASAEEAQAA PEVVLGTFPV 660
  661 NSIPATVLFD SGATHSFISK KFVGMHGLIR EELSTPMRVH TPGNSSTSVQ FSPSITIEIQ 720
  721 RSPFLANLIL LESKDLDVIL GMDWLTKFKG VIDCASRTVT LTNEKGETVV YKSLVSPKKG 780
  781 VSLNQIETEI PVDTVEKNLR KLEDIPIVCE YPEVFPEDLT TMPPKREIEF RIDLAPGTAP 840
  841 IYKRPYRMAA NELAEVKKQV DEQLQKGYIR PSTSPWGAPV IFVEKKDKTK RMCVDYRALN 900
  901 EVTIKNKYPL PRIDDLFDQL KGAKVFSKID LRSGYHQLRI REEDIPKTAF TTRYGLYECT 960
  961 VMSFGLTNAP AFFMNLMNKV FMEFLDKFVV VFIDDILIYS KSKEEHEQHL RLVLEKLKEH1020
 1021 QLYAKFSKCD FWLTEVKFLG HVITAQGVAV DPSNVESVTK WTPPKTVSQI RSFLGLAGYY1080
 1081 RRFIENFSRI ARPMTQLLKK DEKFKWTAEC DKSFEELKKK LVSAPVLILP DPTKDFQVYC1140
 1141 DASRHGLGCV LMQEGRVVAY ASRQLRPHEG NYPTHDLELA AVVHALKIWR HYLIGNRCEV1200
 1201 YTDHKSLKYI FTQPDLNLRQ RRWLELIKDY DMSIHYHPGK ANVVADALSR KSYCTALCIE1260
 1261 GMCEELRQEF EHLNMGIVEH GFVAALEARP TLVDQVRAAQ VNDSEIAELK KNMRVGKARD1320
 1321 FHEDEHGTIW MGERLCVPDD KELKDLILTE AHQTQYSIHP GSTKMYQDLK EKFWWVSMRR1380
 1381 EIAEFVALCD VCQRVKAEHQ RPAGLLQPLQ IPEWKWEEIG MDFITGLPRT SSGHDSIWVV1440
 1441 VDRLTKVAHF IPVHTTYTGK RLAELYLSRI MCLHGVPKKI VSDRGSQFTS KFWQKLQEEM1500
 1501 GTRLNFSTAY HPQTDGQTER VNQILEDMLR ACALDFGGAW DKSLPYAEFS YNNSYQASLQ1560
 1561 MAPFEALYGR KCRTPLFWDQ TGERQLFGTK VLAEAEEKVR IIRERLRIAQ SRQKSYADNR1620
 1621 RRELTFEAGD YVYLRVTPLR GVHRFQTKGK LAPRFVGPYK ILERRGEVAY QLELPSNMIG1680
 1681 IHDVFHVSQL KKCLRVPEEQ ADSEHIDIQE DLTYVEKPVR ILDTSERRTR NKVTRFCRVQ1740
 1741 WSHHSEEEAT WEREDELKAA HPHLFTSSSE SRGRDSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] deduced N/A No confident structure predictions are available.
    2 View Details [198..296] deduced N/A No confident structure predictions are available.
    3 View Details [297..361] deduced N/A No confident structure predictions are available.
    4 View Details [362..486] Pfam 34.244125 No description for PF03732.9 was found. No confident structure predictions are available.
    5 View Details [487..580] deduced N/A No confident structure predictions are available.
    6 View Details [581..824] PSI-BLAST 14.0 No description for 2o40A was found.
    7 View Details [825..1352] PSI-BLAST 134.0 No description for 2rf2A was found.
    8 View Details [1353..1698] PSI-BLAST 60.69897 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    9 View Details [1699..1777] Pfam 12.036212 No description for PF00385.16 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle