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Protein Overview: PDX12_ORYSJ

General Information:
Name(s) found: PDX12_ORYSJ [Swiss-Prot]
Description(s) found:
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  • gi|37530308|ref|NP_919456.1| putative pyridoxine/pyridoxal 5-phosphate biosynthesis protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|31429734|gb|AAP51743.1| pyridoxin biosynthesis protein ER1, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|215765708|dbj|BAG87405.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|19920206|gb|AAM08638.1|AC108883_11 Putative pyridoxine/pyridoxal 5-phosphate biosynthesis protein [Oryza sativa] [NCBI NR]
  • gi|18481963|gb|AAL73561.1|AC079632_5 Putative ethylene-inducible protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|115480834|ref|NP_001064010.1| Os10g0100700 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113638619|dbj|BAF25924.1| Os10g0100700 [Oryza sativa Japonica Group] [NCBI NR]
  • Probable pyridoxal 5'-phosphate synthase subunit PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1 [Swiss-Prot]
  • putative pyridoxine/pyridoxal 5-phosphate biosynthesis protein [Oryza sativa (japonica cultivar-group)]gi|31429734|gb|AAP51743.1| putative pyridoxine/pyridoxal 5-phosphate biosynthesis protein [Oryza sativa (japonica cultivar-group)]gi|19920206|gb|AAM08 [nrdb_11152004_Chlamydomonas]
  • Os10g0100700 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Putative ethylene-inducible protein [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Putative pyridoxine/pyridoxal 5-phosphate biosynthesis protein [Oryza sativa] [nr-271106-contam.fasta]
  • pyridoxin biosynthesis protein ER1, putative, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 313 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDGTDVVA LYGGANGLSH KSGSFSVKVG LAQMLRGGVI MDVVTPEQAR IAEEAGACAV  60
   61 MALERVPADI RAQGGVARMS DPGLIRDIKR SVTIPVMAKA RIGHLVEAQI LEAIGVDYVD 120
  121 ESEVLTLADD AHHINKNNFR VPFVCGCRDL GEALRRIREG AAMIRTKGEA GTGNVVEAVR 180
  181 HVRSVMGDIR ALRSMDDDEV FSYAKRIAAP YDLVMQTKQL GRLPVVQFAA GGVATPADAA 240
  241 LMMQLGCDGV FVGSGIFKSG DPALRARAIV QAVTHYSDPK ILAEVSSGLG EAMVGINLSD 300
  301 PKIHVERFAA RSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..313] PSI-BLAST 120.0 Structure of the synthase subunit of PLP synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.44231061702877 bayes_pls_golite062009
  • ribulose-phosphate 3-epimerase activity
    		•  1.56591581078504 bayes_pls_golite062009
  • binding
    		•  0.283052085721618 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.21095259308705 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle