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Protein Overview: gi|113611953, gi...

General Information:
Name(s) found: gi|51963598 [NCBI NR]
gi|50939515 [NCBI NR]
gi|27261099 [NCBI NR]
gi|215737788 [NCBI NR]
gi|215737685 [NCBI NR]
gi|215704327 [NCBI NR]
gi|125601250 [NCBI NR]
gi|115473637 [NCBI NR]
gi|113611953 [NCBI NR]
Description(s) found:
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  • gi|51963598|ref|XP_506503.1| PREDICTED OJ1340_C08.131 gene product [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|50939515|ref|XP_479285.1| putative eukaryotic translation initiation factor 6 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|27261099|dbj|BAC45212.1| putative eukaryotic translation initiation factor 6 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215737788|dbj|BAG96918.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215737685|dbj|BAG96815.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215704327|dbj|BAG93761.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125601250|gb|EAZ40826.1| hypothetical protein OsJ_25302 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115473637|ref|NP_001060417.1| Os07g0639800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113611953|dbj|BAF22331.1| Os07g0639800 [Oryza sativa Japonica Group] [NCBI NR]
  • putative eukaryotic translation initiation factor 6 [Oryza sativa (japonica cultivar-group)]gi|51963598|ref|XP_506503.1| PREDICTED OJ1340_C08.131 gene product [Oryza sativa (japonica cultivar-group)]gi|27261099|dbj|BAC45212.1| putative eukaryotic transl [nrdb_11152004_Chlamydomonas]
  • Os07g0639800 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • putative eukaryotic translation initiation factor 6 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 245 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRIQFENN CEVGVFSKLT NAYCLVAIGG SENFYSAFES ELADVIPVVK TSIGGTRIIG  60
   61 RLCVGNKNGL LLPHTTTDQE LQHLRNCLPD QVVVQRIDER LSALGNCVAC NDHVALTHPD 120
  121 LDKATEELIA DVLGVEVFRQ TIAGNILVGS YCAITNRGGL VHPHTSIEDL DELSTLLQVP 180
  181 LVAGTVNRGS EVIAAGMTVN DWTAFCGSDT TATELSVIES VFKLREGQPA AIVDDMRKSL 240
  241 IDSYV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..245] PSI-BLAST 102.0 Ribosome anti-association factor eIF6 (aIF6)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation initiation factor activity
    		•  2.82313826209658 bayes_pls_golite062009
  • ribosomal large subunit binding
    		•  2.29551693750603 bayes_pls_golite062009
  • binding
    		•  1.48640777619976 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.14138534491569 bayes_pls_golite062009
  • hydrolase activity
    		•  1.05437300113124 bayes_pls_golite062009
  • catalytic activity
    		•  0.889920589881492 bayes_pls_golite062009
  • protein binding
    		•  0.21271994410782 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle