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Protein Overview: GH38_ORYSJ

General Information:
Name(s) found: GH38_ORYSJ [Swiss-Prot]
Description(s) found:
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  • gi|50938901|ref|XP_478978.1| putative Nt-gh3 deduced protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|33146510|dbj|BAC79627.1| putative Nt-gh3 deduced protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222637381|gb|EEE67513.1| hypothetical protein OsJ_24963 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|122167127|sp|Q0D4Z6.1|GH38_ORYSJ RecName: Full=Probable indole-3-acetic acid-amido synthetase GH3.8; AltName: Full=Auxin-responsive GH3-like protein 8; Short=OsGH3-8 [NCBI NR]
  • gi|115473129|ref|NP_001060163.1| Os07g0592600 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113611699|dbj|BAF22077.1| Os07g0592600 [Oryza sativa Japonica Group] [NCBI NR]
  • Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1 [Swiss-Prot]
  • putative Nt-gh3 deduced protein [Oryza sativa (japonica cultivar-group)]gi|33146510|dbj|BAC79627.1| putative Nt-gh3 deduced protein [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • Os07g0592600 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • putative Nt-gh3 deduced protein [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 605 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMTDVSTT GTALRTPAAG AVKEGDVEKL RFIDEMTTNV DAVQERVLGE ILGRNAGTEY  60
   61 LTKCGLDGAT DRAAFRAKVP VVSYDDLQPY IQRIANGDRS PILSTHPVSE FLTSSGTSAG 120
  121 ERKLMPTIMD ELDRRQLLYS LLMPVMNLYV PGLDKGKGLY FLFVKSETKT PGGLTARPVL 180
  181 TSYYKSDHFK NRPYDPYHNY TSPTAAILCA DAFQSMYAQM VCGLCQRNDV LRLGAVFASG 240
  241 LLRAIRFLQL NWEQLADDIE SGELTPRVTD PSVREAVAAI LLPDPELAKL IRAECSKGDW 300
  301 AGIITRVWPN TKYLDVIVTG AMAQYIPTLE FYSGGLPMAC TMYASSECYF GLNLRPMCDP 360
  361 SEVSYTIMPN MGYFEFLPVD ETGAASGDAT QLVDLARVEV GREYELVITT YAGLNRYRVG 420
  421 DVLRVTGFHN AAPQFRFVRR KNVLLSIESD KTDEAELQRA VERASALLRP HGASVVEYTS 480
  481 QACTKRIPGH YVIYWELLTK GAGATVVDAD TLGRCCLEME EALNTVYRQS RVADGSIGPL 540
  541 EIRVVRPGTF EELMDYAISR GASINQYKVP RCVTFPPIVE LLDSRVVSSH FSPALPHWTP 600
  601 ARRSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..113] MSA 3.063975 View MSA. No confident structure predictions are available.
    2 View Details [114..274] deduced N/A No confident structure predictions are available.
    3 View Details [275..534] MSA 1.070948 View MSA. No confident structure predictions are available.
    4 View Details [535..605] MSA 2.065994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle