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Protein Overview: C3H50_ORYSJ

General Information:
Name(s) found: C3H50_ORYSJ [Swiss-Prot]
Description(s) found:
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  • gi|75298080|sp|Q84SL2.1|C3H50_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 50; Short=OsC3H50; AltName: Full=Protein ZF [NCBI NR]
  • gi|51963484|ref|XP_506415.1| PREDICTED OJ1092_A07.129 gene product [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|34899832|ref|NP_911262.1| CCCH-type zinc finger protein-like protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|27817905|dbj|BAC55671.1| CCCH-type zinc finger protein-like protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215695463|dbj|BAG90654.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215695404|dbj|BAG90595.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125600770|gb|EAZ40346.1| hypothetical protein OsJ_24792 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115472859|ref|NP_001060028.1| Os07g0568300 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113611564|dbj|BAF21942.1| Os07g0568300 [Oryza sativa Japonica Group] [NCBI NR]
  • Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1 [Swiss-Prot]
  • CCCH-type zinc finger protein-like protein [Oryza sativa (japonica cultivar-group)]gi|51963484|ref|XP_506415.1| PREDICTED OJ1092_A07.129 gene product [Oryza sativa (japonica cultivar-group)]gi|27817905|dbj|BAC55671.1| CCCH-type zinc finger protein-like [nrdb_11152004_Chlamydomonas]
  • Os07g0568300 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • CCCH-type zinc finger protein-like protein [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 657 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW  60
   61 YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA 120
  121 VAVVKLLLAA GADPATPDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG 180
  181 SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF 240
  241 KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG 300
  301 VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA 360
  361 AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE 420
  421 WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS 480
  481 PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTMEPTSPLS 540
  541 ARVGAPATQR PSVGSPRNSS AWGTVGSPMG KVDWGVDSEE LVRLRRPAQP GFGEDETDVS 600
  601 WVQSLVSNAE LNGKRGEVQG MPGTSALMNR PDLNNQGDLL DQTVIGAWLE QMHLDQK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..373] PSI-BLAST 59.045757 Ankyrin-R
    2 View Details [374..544] deduced N/A No confident structure predictions are available.
    3 View Details [545..657] MSA 4.164996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.64

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle