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Protein Overview: gi|46912522, gi|...

General Information:
Name(s) found: gi|54308096 [NCBI NR]
gi|46912522 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|54308096|ref|YP_129116.1| flagellar basal body rod modification protein [Photobacterium profundum SS9] [NCBI NR]
  • gi|46912522|emb|CAG19314.1| Putative basal-body rod modification protein FlgD [Photobacterium profundum SS9] [NCBI NR]
    • Organism: Photobacterium profundum SS9
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGITGAGQS NLSYLDQLKG MQEKKLQDTQ SKVTGQNELK QDDFLSLLTK QLAQQDPFKP  60
   61 VGNDQMIAQM ASFATVDGIN QMNEQFGSLN SAMTSSQALQ ASSLVGRDVL IPGATGVKKA 120
  121 EGGITGMVKL PQALDNMMVR IENEQGQLIK TFDLGAKPPG EHRLEWDGTD EDGKPLPEGR 180
  181 YQVKASGMVG GENREFEVST YANVNSVLLG NGDGNVMLNL AGHNSPFKLA EVLEVGKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] Pfam 21.79588 No description for PF03963.5 was found. No confident structure predictions are available.
    2 View Details [135..238] PSI-BLAST 9.045757 Structure of C5a peptidase- a key virulence factor from Streptococcus


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle