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Protein Overview: gi|46915335, gi|...

General Information:
Name(s) found: gi|54301915 [NCBI NR]
gi|46915335 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|54301915|ref|YP_131908.1| 2-methylisocitrate lyase [Photobacterium profundum SS9] [NCBI NR]
  • gi|46915335|emb|CAG22108.1| putative carboxyphosphonoenolpyruvate phosphonomutase [Photobacterium profundum SS9] [NCBI NR]
    • Organism: Photobacterium profundum SS9
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPGKRFRQA VAQNNPLQIV GTINPYCAMM AEQVGHQAIY LSGGGIANAS YGLPDLGITT  60
   61 LNDVLEDVRR ITAATQLPLL VDIDTGFGGA FNIARTVKEM ERAGAAAIHM EDQVAQKRCG 120
  121 HRPNKAIVSQ SEMVDRIKAA ADARVDSDFV IMARTDALAV EGMDSAIARA IACVEAGADM 180
  181 IFPEAINSLE QYQQFSDAVN VPILANITEF GQTPLFSVEE LAECGVDMVL YPLSAFRAMN 240
  241 QAALNVYQHL KSDGHQRNVV DQMQTREQLY HYLGYHDYEQ KLDHLFKKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..289] PSI-BLAST 81.0 2-methylisocitrate lyase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.96882793316847 bayes_pls_golite062009
  • methylisocitrate lyase activity
    		•  2.09739770469711 bayes_pls_golite062009
  • citrate (pro-3S)-lyase activity
    		•  0.86095690814621 bayes_pls_golite062009
  • lyase activity
    		•  0.70986506551964 bayes_pls_golite062009
  • transferase activity
    		•  0.5687068385416 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.404868472347919 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.36217387205482 bayes_pls_golite062009
  • carboxyvinyl-carboxyphosphonate phosphorylmutase activity
    		•  0.2132734143313 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle