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Protein Overview: gi|54287453

General Information:
Name(s) found: gi|54287453 [NCBI NR]
Description(s) found:
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  • gi|54287453|gb|AAV31197.1| putative polyprotein [Oryza sativa Japonica Group] [NCBI NR]
  • putative polyprotein [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
    • Organism: Oryza sativa Japonica Group
    Length: 1086 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKYLWKPL LRFSGESYRF SPLSRSCAQD RRGDGVRPRQ IRRLRAGEAG SRAVSGGNRA  60
   61 VRDGNRLGRR ARGNPSVLKV FARLGAVTVR FCMVTVGFVI YETIYVCACT YNYVVLLHNG 120
  121 RVEMSDSRDP VWEHGENIPP GWRCKYCHTK RGGGGATRLK QHLAARGKGV TYCNSVPPDV 180
  181 REFFCRELDR IKDAGDQRKS DSGRRVEAAR VNYYDLTGDA DEEEQMEAAI AASRQDENFR 240
  241 RDVEERGGTY EHGGGSGSAQ PEARKGRSNP ITNMLRRATS HRESPAVRDY NLASAKAPVQ 300
  301 PRIDTGFFTK KGKQARQAIG ESWARFFFTA GIPGRNADNP YFVSAVRETQ KWGESVPSPT 360
  361 GNEIDGKYLD STEKDVKKQF DRFKKDWDEY GVTIMCDSWT GPTSMSVINF LIYCNGIMFF 420
  421 HKSIDATGQS QDANFVLKEI RKVVREIGSE HVVQIITDNG SNYKKACRLL RQEYKTIVWQ 480
  481 PCVAHTVNLM LKEVGKMPDH EMVIESARKI CRWLYNHNKL HAMMVLAIGG ELVKWNATRF 540
  541 GTNYMFLQSF LRKRDLFMQW MASSVFMQSK FSGTLEGRYA HACLSSLSWW ENLEAVVNSV 600
  601 QPMYSFLRFA DEDKNPNLSE VLLRYQLLKM EYDTLFANQR DKFEAYMEIV NRRMHDLTNE 660
  661 TLINAAAALN PRTHYAYSPS ATVFQDLRQA FEWMTDIDTA AAALLEVEMY RRKTGEFGRA 720
  721 LARRMAIDGK TSPAQWWSMF ASDTPNLKKL ALRLVGQCCS SSGCERNWST FAFVHTKVRN 780
  781 RLTHKKLNKL VYVNYNLRLR IQQANAQIRV EDDDPLQRLA DLSFYETNNH ISAWMDNARS 840
  841 NACPELDEDS AESDAPLPSQ LVSDLVNLDD LRRTTGASSI AEWADTNVGD THIGKRKTRK 900
  901 PPKARPSKKV KGKGPRSTSV DSDEETQGSP EYQESNDSSS RTETDDGDDD GQGGQGTTNV 960
  961 PPRGHTQQSD HHSPVQFTGE GDFTHATQDQ DHGAPSSQRT TIAPGVRQQQ QFSDIQQDSS1020
 1021 SSFSASSFES GYPTYVYNRP QASDYPATTW VYEWQEPQCS NISRLPSSYR GYRTKPCGYR1080
 1081 VHTVDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] deduced N/A No confident structure predictions are available.
    2 View Details [118..219] Pfam 18.886057 No description for PF07567.4 was found. No confident structure predictions are available.
    3 View Details [220..311] deduced N/A No confident structure predictions are available.
    4 View Details [312..805] PSI-BLAST 51.69897 Three-dimensional structure of the Hermes DNA transposase
    5 View Details [806..934] deduced N/A No confident structure predictions are available.
    6 View Details [935..1086] MSA 6.238997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle