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Protein Overview: ALFL5_ARATH

General Information:
Name(s) found: ALFL5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|57222198|gb|AAW39006.1| At5g20510 [Arabidopsis thaliana] [NCBI NR]
  • gi|54261727|gb|AAV31167.1| At5g20510 [Arabidopsis thaliana] [NCBI NR]
  • gi|30687843|ref|NP_197551.2| AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding [Arabidopsis thaliana] [NCBI NR]
  • PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1 [Swiss-Prot]
  • At5g20510 [Arabidopsis thaliana]gi|30687843|ref|NP_197551.2| PHD finger family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 PHD finger family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | PHD finger family protein | chr5:6939993-6942848 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g20510 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 260 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    methylated histone residue binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE  60
   61 VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD AWLLSVSFYF GSRFGFDRAD 120
  121 RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK 180
  181 DEEEGLELEE GEEEEDEDED EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA 240
  241 RAEHIKHYKC PTCSNKRARP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] MSA 2.102954 View MSA. No confident structure predictions are available.
    2 View Details [116..202] deduced N/A No confident structure predictions are available.
    3 View Details [203..260] PSI-BLAST 15.0 No description for 2f6jA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle