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Protein Overview: gi|32402450, gi|...

General Information:
Name(s) found: gi|42562428 [NCBI NR]
gi|32402450 [NCBI NR]
Description(s) found:
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  • gi|42562428|ref|NP_174399.2| agl63 (AGAMOUS-LIKE 63); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|32402450|gb|AAN52807.1| MADS-box protein AGL63 [Arabidopsis thaliana] [NCBI NR]
  • MADS-box protein AGL63 [Arabidopsis thaliana]gi|42562428|ref|NP_174399.2| MADS-box protein (AGL63) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: AGL63 | AGL63 (AGAMOUS-LIKE 63); DNA binding / transcription factor | chr1:11118012-11119654 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MADS-box protein AGL63 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AGL63, GOA | GORDITA | chr1:11118031-11119673 FORWARD LENGTH=213 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MADS-box protein AGL63 OS=Arabidopsis thaliana GN=GOA PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9SA07, MADS-box protein AGL63 OS=Arabidopsis thaliana GN=GOA PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 213 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: integument development [IMP]
    fruit development [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGKRVIKK IEEKIKRQVT FAKRKKSLIK KAYELSVLCD VHLGLIIFSH SNRLYDFCSN  60
   61 STSMENLIMR YQKEKEGQTT AEHSFHSCSD CVKTKESMMR EIENLKLNLQ LYDGHGLNLL 120
  121 TYDELLSFEL HLESSLQHAR ARKSEFMHQQ QQQQTDQKLK GKEKGQGSSW EQLMWQAERQ 180
  181 MMTCQRQKDP APANEGGVPF LRWGTTHRRS SPP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] PSI-BLAST 18.69897 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [88..213] MSA 10.413996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.0368771990474 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle