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Protein Overview: Spc98, YNL126W_W303

General Information:
Name(s) found: YNL126W_W303 [2015-02-RJAZ90-91-SPB-DB_PlusRev.fasta]
Spc98 [2015-02-RJAZ90-91-SPB-DB_PlusRevII.fasta]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • SPC98 ORF Verified Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque [2015-02-RJAZ90-91-SPB-DB_PlusRev.fasta]
  • YNL126W_W303 SPC98 ORF Verified Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque [2015-02-RJAZ90-91-SPB-DB_PlusRevII.fasta]
    • Organism: Saccharomyces cerevisiae W303
    Length: 846 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEPTLFGI IEALAPQLLS QSHLQTFVSD VVNLLRSSTK SATQLGPLID FYKLQSLDSP  60
   61 ETTIMWHKIE KFLDALFGIQ NTDDMVKYLS VFQSLLPSNY RAKIVQKSSG LNMENLANHE 120
  121 HLLSPVRAPS IYTEASFENM DRFSERRSMV SSPNRYVPSS TYSSVTLRQL SNPYYVNTIP 180
  181 EEDILKYVSY TLLATTSALF PFDHEQIQIP SKIPNFESGL LHLIFEAGLL YQSLGYKVEK 240
  241 FRMLNISPMK KALIIEISEE LQNYTAFVNN LVSSGTVVSL KSLYREIYEN IIRLRIYCRF 300
  301 TEHLEELSGD TFLIELNIFK SHGDLTIRKI ATNLFNSMIS LYYEYLMNWL TKGLLRATYG 360
  361 EFFIAENTDT NGTDDDFIYH IPIEFNQERV PAFIPKELAY KIFMIGKSYI FLEKYCKEVQ 420
  421 WTNEFSKKYH VLYQSNSYRG ISTNFFEIIN DQYSEIVNHT NQILNQKFHY RDVVFALKNI 480
  481 LLMGKSDFMD ALIEKANDIL ATPSDSLPNY KLTRVLQEAV QLSSLRHLMN SPRNSSVING 540
  541 LDARVLDLGH GSVGWDVFTL DYILYPPLSL VLNVNRPFGR KEYLRIFNFL WRFKKNNYFY 600
  601 QKEMLKSNDI IRSFKKIRGY NPLIRDIINK LSRISILRTQ FQQFNSKMES YYLNCIIEEN 660
  661 FKEMTRKLQR TENKSQNQFD LIRLNNGTIE LNGILTPKAE VLTKSSSSKP QKHAIEKTLN 720
  721 IDELESVHNT FLTNILSHKL FATNTSEISV GDYSGQPYPT SLVLLLNSVY EFVKVYCNLN 780
  781 DIGYEIFIKM NLNDHEASNG LLGKFNTNLK EIVSQYKNFK DRLYIFRADL KNDGDEELFL 840
  841 LSKSLR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] deduced N/A No confident structure predictions are available.
    2 View Details [159..707] ORFEUS 7.19 Clathrin heavy chain proximal leg segment
    3 View Details [708..846] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • cytoskeletal protein binding
    		•  2.57708254106901 bayes_pls_golite062009
  • binding
    		•  2.38363524631144 bayes_pls_golite062009
  • protein binding
    		•  1.81870125631028 bayes_pls_golite062009
  • actin binding
    		•  1.74253257307802 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  1.31927971777231 bayes_pls_golite062009
  • protein binding
    		•  0.614639185145051 bayes_pls_golite062009
  • catalytic activity
    		•  0.370165934559297 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle