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Protein Overview: gi|50122495, gi|...

General Information:
Name(s) found: gi|50122495 [NCBI NR]
gi|49613021 [NCBI NR]
Description(s) found:
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  • gi|50122495|ref|YP_051662.1| alpha-dehydro-beta-deoxy-D-glucarate aldolase [Pectobacterium atrosepticum SCRI1043] [NCBI NR]
  • gi|49613021|emb|CAG76472.1| 2-dehydro-3-deoxyglucarate aldolase [Pectobacterium atrosepticum SCRI1043] [NCBI NR]
  • 2-dehydro-3-deoxyglucarate aldolase [Erwinia carotovora subsp. atroseptica SCRI1043]gi|49613021|emb|CAG76472.1| 2-dehydro-3-deoxyglucarate aldolase [Erwinia carotovora subsp. atroseptica SCRI1043] [nrdb_11152004_Chlamydomonas]
  • alpha-dehydro-beta-deoxy-D-glucarate aldolase [Pectobacterium atrosepticum SCRI1043] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • 2-dehydro-3-deoxyglucarate aldolase [Erwinia carotovora subsp. atroseptica SCRI1043] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
    • Organism: Pectobacterium atrosepticum SCRI1043
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPLLPNRF RQDLQQGKTL IGCWCALGNP ISTEVLGLAG FDWLVLDGEH APNDIVTFIP  60
   61 QLMALKGSHS APVVRPPCNE PIIIKRLLDI GFNNFLIPFV ETAEEAARAV ASTRYPPAGI 120
  121 RGVSVAHRSN SYGTEPDYFA KINDNITVVV QIESQDGLDN LDAIIAVDGV DGVFVGPSDL 180
  181 SAALGYLGQP NHPDVQKAIR HIFDRAAAHN KPCGILAPVE ADARRYLEWG ASFVAVGSDL 240
  241 GVFRSATQAL SDKYKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..256] PSI-BLAST 57.0 2-dehydro-3-deoxy-galactarate aldolase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.59838799615646 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.920775369999745 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.5165407619773 bayes_pls_golite062009
  • 2-dehydro-3-deoxyglucarate aldolase activity
    		•  0.476503494662165 bayes_pls_golite062009
  • binding
    		•  0.415920162243587 bayes_pls_golite062009
  • transferase activity
    		•  0.368032846714701 bayes_pls_golite062009
  • lyase activity
    		•  0.0456521871650777 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle