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Protein Overview: NbS00026464g0002...

General Information:
Name(s) found: NbS00002081g0004.1 [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
NbS00023143g0001.1 [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
NbS00026464g0002.1 [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
Description(s) found:
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  • protein AED:0.38 eAED:0.38 QI:184|1|0.5|1|0|0.5|2|0|110; (*GB) gi|115461126|ref|NP_001054163.1| (e_value=8e-75) Os04g0663300 [Oryza sativa Japonica Group];; (*SWP) sp|Q0WMV8|PHF5B_ARATH (e_value=4e-76) PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1;; (*TAIR) AT2G30000.1 (e_value=3e-77) | Symbols: | PHF5-like protein | chr2:12804042-12804374 REVERSE LENGTH=110;; (*ITAG) Solyc12g010340.1.1 (e_value=2e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3407156-3407488 transcript_region:SL2.40ch12:3407156..3407488+ functional_description:"Pre-mRNA-splicing factor ini1 (AHRD V1 **-- B9T1J2_RICCO); contains Interpro domain(s) IPR005345 PHF5-like "; [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
  • protein AED:0.00 eAED:0.00 QI:166|1|0.5|1|0|0|2|0|110; (*GB) gi|115461126|ref|NP_001054163.1| (e_value=8e-75) Os04g0663300 [Oryza sativa Japonica Group];; (*SWP) sp|Q0WMV8|PHF5B_ARATH (e_value=4e-76) PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1;; (*TAIR) AT2G30000.1 (e_value=3e-77) | Symbols: | PHF5-like protein | chr2:12804042-12804374 REVERSE LENGTH=110;; (*ITAG) Solyc12g010340.1.1 (e_value=2e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3407156-3407488 transcript_region:SL2.40ch12:3407156..3407488+ functional_description:"Pre-mRNA-splicing factor ini1 (AHRD V1 **-- B9T1J2_RICCO); contains Interpro domain(s) IPR005345 PHF5-like "; [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
  • protein AED:0.24 eAED:0.24 QI:90|0|0.5|1|0|0.5|2|0|110; (*GB) gi|115461126|ref|NP_001054163.1| (e_value=8e-75) Os04g0663300 [Oryza sativa Japonica Group];; (*SWP) sp|Q0WMV8|PHF5B_ARATH (e_value=4e-76) PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1;; (*TAIR) AT2G30000.1 (e_value=3e-77) | Symbols: | PHF5-like protein | chr2:12804042-12804374 REVERSE LENGTH=110;; (*ITAG) Solyc12g010340.1.1 (e_value=2e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3407156-3407488 transcript_region:SL2.40ch12:3407156..3407488+ functional_description:"Pre-mRNA-splicing factor ini1 (AHRD V1 **-- B9T1J2_RICCO); contains Interpro domain(s) IPR005345 PHF5-like "; [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
    • Organism: Nicotiana benthamiana
    Length: 110 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRVCDECN YGSFQGRCVI  60
   61 CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY ERKKYGFKKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] Pfam 85.886057 No description for PF03660.5 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle