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Protein Overview: RL1_THETH

General Information:
Name(s) found: RL1_THETH [Swiss-Prot]
Description(s) found:
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  • gi|730540|sp|P27150.3|RL1_THETH RecName: Full=50S ribosomal protein L1 [NCBI NR]
  • gi|7245459|pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A Cryo-Em Map Of The E.Coli 70s Ribosome [NCBI NR]
  • gi|587584|emb|CAA57139.1| ribosomal protein L1 [Thermus thermophilus] [NCBI NR]
  • gi|160285428|pdb|1VSP|A Chain A, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh [NCBI NR]
  • gi|149240886|pdb|1VSA|A Chain A, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 [NCBI NR]
  • gi|119389848|pdb|2HGU|C Chain C, 70s T.Th. Ribosome Functional Complex With Mrna And E- And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgr. [NCBI NR]
  • gi|119389792|pdb|2HGQ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome With Translocated And Rotated Shine-Dalgarno Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgp. [NCBI NR]
  • gi|119389735|pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. [NCBI NR]
  • 50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3 [Swiss-Prot]
  • LSU ribosomal protein L1P [Thermus thermophilus HB27]gi|587584|emb|CAA57139.1| ribosomal protein L1 [Thermus thermophilus]gi|46197669|gb|AAS82081.1| LSU ribosomal protein L1P [Thermus thermophilus HB27]gi|2120598|pir||S66577 ribosomal protein L1 - Ther [nrdb_11152004_Chlamydomonas]
  • 50S ribosomal protein L1 [nr-271106-contam.fasta]
  • Chain N, Fitting Of Components With Known Structure Into An 11.5 A Cryo-Em Map Of The E.Coli 70s Ribosome [nr-271106-contam.fasta]
  • ribosomal protein L1 [Thermus thermophilus] [nr-271106-contam.fasta]
    • Organism: Thermus thermophilus
    Length: 229 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKHGKRYRA LLEKVDPNKI YTIDEAAHLV KELATAKFDE TVEVHAKLGI DPRRSDQNVR  60
   61 GTVSLPHGLG KQVRVLAIAK GEKIKEAEEA GADYVGGEEI IQKILDGWMD FDAVVATPDV 120
  121 MGAVGSKLGR ILGPRGLLPN PKAGTVGFNI GEIIREIKAG RIEFRNDKTG AIHAPVGKAS 180
  181 FPPEKLADNI RAFIRALEAH KPEGAKGTFL RSVYVTTTMG PSVRINPHS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..229] PSI-BLAST 81.39794 70S ribosome functional complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.98821526471491 bayes_pls_golite062009
  • structural molecule activity
    		•  9.4110731269774 bayes_pls_golite062009
  • binding
    		•  1.37133122073906 bayes_pls_golite062009
  • protein binding
    		•  0.335149649581279 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle