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Protein Overview: gi|39983987, gi|...

General Information:
Name(s) found: gi|39997097 [NCBI NR]
gi|39983987 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|39997097|ref|NP_953048.1| hfq protein [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39983987|gb|AAR35375.1| hfq protein [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 74 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA metabolic process [ISS]
    mRNA polyadenylation [ISS]
    Molecular Function: RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAPFNIQD QYLNQSRKER IKVAVRLMSG EKLEGYIKSF DNFSVLMEIQ GDMLIYKHAI  60
   61 TSITSVDGHF RLHQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..74] PSI-BLAST 25.154902 Hfq protein from Pseudomonas aeruginosa. Low-salt crystals

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 3.35169246976368 bayes_pls_golite062009
  • RNA binding
    		•  2.84369313702118 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.07404179279328 bayes_pls_golite062009
  • binding
    		•  0.707187860129652 bayes_pls_golite062009
  • catalytic activity
    		•  0.312834499620126 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle