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Protein Overview: RLMB_COXBU

General Information:
Name(s) found: RLMB_COXBU [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=rlmB PE=3 SV=1 [Swiss-Prot]
    • Organism: Coxiella burnetii RSA 493
    Length: 250 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: rRNA modification [ISSLink to PubMed article]
    Molecular Function: RNA methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIKSIYGI HAVSGVLDAA PQRIVKLYVQ ENRDDQRLQS LVEKAKALGV KVILLSRTEL  60
   61 NTLSNEKHQG IVADCEEVEN LDESALLSLL KKRETPALLL ILDGVKDPHN LGACLRSANA 120
  121 FGVRAVIAPK DRAVGVTPVV RKVACGAAEM TPFIRVTNLS RTIDWLQKEG VWIVGTAVEA 180
  181 ETLIQEIDLT GDIAIVLGSE GAGLRRLTKE RCDFLAQIPL RGSVESLNVS VACGICLYEV 240
  241 QRQREAPAPS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 65.30103 RlmB, C-terminal domain; RlmB, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA methyltransferase activity
    		•  4.23455016472464 bayes_pls_golite062009
  • methyltransferase activity
    		•  3.59960278169345 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  3.51722801996622 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  3.14976989427746 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  2.33123191403389 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.23755555119187 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  2.14623472760939 bayes_pls_golite062009
  • transferase activity
    		•  1.63934797352054 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.0137045454994 bayes_pls_golite062009
  • catalytic activity
    		•  0.797300463760338 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.736216022000293 bayes_pls_golite062009
  • structural molecule activity
    		•  0.694233763389628 bayes_pls_golite062009
  • binding
    		•  0.650146274744039 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.404179021204849 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  0.319046095835882 bayes_pls_golite062009
    		• 0.16936231012632 bayes_pls_golite062009
  • snoRNA binding
    		•  0.155192244522672 bayes_pls_golite062009
  • protein binding
    		•  0.031057919963412 bayes_pls_golite062009
  • rRNA (guanine-N1-)-methyltransferase activity
    		•  6.26422903788337E-4 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle