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Protein Overview: gi|29141106, gi|...

General Information:
Name(s) found: gi|29141106 [NCBI NR]
gi|29136732 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 878 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLAREITP VNIEEELKSS YLDYAMSVIV GRALPDVRDG LKPVHRRVLY AMNVLGNDWN  60
   61 KAYKKSARVV GDVIGKYHPH GDSAVYDTIV RMAQPFSLRY MLVDGQGNFG SIDGDSAAAM 120
  121 RYTEIRLAKI AHGLMADLEK ETVDFVDNYD GTEKIPDVMP TKIPNLLVNG SSGIAVGMAT 180
  181 NIPPHNLTEV INGCLAYIDN EDISIEGLME HIPGPDFPTA AIINGRRGIE EAYRTGRGKV 240
  241 YIRARAEVEA DAKTGRETII VHEIPYQVNK ARLIEKIAEL VKDKRVEGIS ALRDESDKDG 300
  301 MRIVIEVKRD AVGEVVLNNL YSQTQLQVSF GINMVALHHG QPKIMNLKDI ISAFVRHRRE 360
  361 VVTRRTIFEL RKARDRAHIL EALAIALANI DPIIELIRRA PTPAEAKAAL ISRPWDLGNV 420
  421 AAMLERAGDD AARPEWLEPE FGVRDGQYYL TEQQAQAILD LRLQKLTGLE HEKLLDEYKE 480
  481 LLEQIAELLH ILGSADRLME VIREEMELIR DQFGDERRTE ITANSADINI EDLISQENVV 540
  541 VTLSHQGYVK YQPLTDYEAQ RRGGKGKSAA RIKEEDFIDR LLVANTHDTI LCFSSRGRLY 600
  601 WMKVYQLPEA SRGARGRPIV NLLPLEANER ITAILPVREY EEGVNVFMAT ASGTVKKTAL 660
  661 TEFSRPRSAG IIAVNLNDGD ELIGVDLTSG SDEVMLFSAA GKVVRFKEDA VRAMGRTATG 720
  721 VRGIKLAGDD KVVSLIIPRG EGAILTVTQN GYGKRTAADE YPTKSRATQG VISIKVTERN 780
  781 GSVVGAVQVD DCDQIMMITD AGTLVRTRVS EISVVGRNTQ GVILIRTAED ENVVGLQRVA 840
  841 EPVDDEELDA IDGSVTEGDE DIAPEAESDD DVADDADE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..528] PSI-BLAST 1000.0 59KDA FRAGMENT OF GYRASE A FROM E. COLI
    2 View Details [529..878] PSI-BLAST 107.0 A Superhelical Spiral in Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA topoisomerase activity
    		•  16.1862836613251 bayes_pls_golite062009
  • DNA topoisomerase (ATP-hydrolyzing) activity
    		•  15.3845248199845 bayes_pls_golite062009
  • isomerase activity
    		•  11.5598219279347 bayes_pls_golite062009
  • DNA binding
    		•  4.42972615310468 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.21774496265744 bayes_pls_golite062009
  • binding
    		•  3.95084202265591 bayes_pls_golite062009
  • catalytic activity
    		•  1.83123392049501 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.17291817800492 bayes_pls_golite062009
  • protein binding
    		•  0.0229806746449869 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle