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Protein Overview: gi|29136233, gi|...

General Information:
Name(s) found: gi|29140609 [NCBI NR]
gi|29136233 [NCBI NR]
Description(s) found:
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  • gi|29140609|ref|NP_803951.1| carbamoyl phosphate synthase small subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] [NCBI NR]
  • gi|29136233|gb|AAO67800.1| carbamoyl-phosphate synthase small chain [Salmonella enterica subsp. enterica serovar Typhi Ty2] [NCBI NR]
  • carbamoyl-phosphate synthase small chain [Salmonella enterica subsp. enterica serovar Typhi Ty2]gi|29136233|gb|AAO67800.1| carbamoyl-phosphate synthase small chain [Salmonella enterica subsp. enterica serovar Typhi Ty2] [nrdb_11152004_Chlamydomonas]
  • carbamoyl-phosphate synthase small subunit [Salmonella enterica subsp. enterica serovar Typhi Ty2] [nr-271106-contam.fasta]
  • carbamoyl-phosphate synthase small chain [Salmonella enterica subsp. enterica serovar Typhi Ty2] [nr-271106-contam.fasta]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. Ty2
    Length: 382 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKSALLVLE DGTQFHGRAI GATGSAVGEV VFNTSMTGYQ EILTDPSYSR QIVTLTYPHI  60
   61 GNVGTNEADE ESSQVHAQGL VIRDLPLIAS NFRNTEDLSS YLKRHNIVAI ADIDTRKLTR 120
  121 LLREKGAQNG CIIAGDSPDA KLALEKAKAF PGLNGMDLAK EVTTAETYRW TQGSWTLKDG 180
  181 LPEAKSEDDL PFHVVAYDFG AKRNILRMLV DRGCRLTVVP AQTSAEEVLK MNPDGIFLSN 240
  241 GPGDPAPCDY AIEAIKKFLQ TDIPVFGICL GHQLLALASG AKTVKMKFGH HGGNHPVKDM 300
  301 DRNVVMITAQ NHGFAVDEDS LPANLRVTHK SLFDGTLQGI HRTDKPAFSF QGHPEASPGP 360
  361 HDAAPLFDHF IELIKHYRSS AK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..382] PSI-BLAST 124.0 Carbamoyl phosphate synthetase, small subunit N-terminal domain; Carbamoyl phosphate synthetase, small subunit C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
    		•  9.74519370915839 bayes_pls_golite062009
  • carbamoyl-phosphate synthase activity
    		•  9.70414577567935 bayes_pls_golite062009
  • carbon-nitrogen ligase activity, with glutamine as amido-N-donor
    		•  9.14496558670743 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  7.05319676113266 bayes_pls_golite062009
  • 4-amino-4-deoxychorismate synthase activity
    		•  4.48164623771604 bayes_pls_golite062009
  • anthranilate synthase activity
    		•  2.51214170411838 bayes_pls_golite062009
  • ligase activity
    		•  1.70348758031146 bayes_pls_golite062009
  • phosphoribosylformylglycinamidine synthase activity
    		•  1.51568729563523 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  1.35896725827905 bayes_pls_golite062009
  • catalytic activity
    		•  1.30391542469987 bayes_pls_golite062009
  • imidazoleglycerol-phosphate synthase activity
    		•  0.270391651600004 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.12569720972861 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.0769356405014503 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle