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Protein Overview: gi|24376202, gi|...

General Information:
Name(s) found: gi|24376202 [NCBI NR]
gi|24351257 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24376202|ref|NP_720246.1| coproporphyrinogen III oxidase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24351257|gb|AAN57689.1|AE015905_1 oxygen-independent coproporphyrinogen III oxidase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: porphyrin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: coproporphyrinogen oxidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQPTQISWD QSMIEKYNYS GPRYTSYPTA LEFDDSFTEQ NLLTAIENSK SDKLSLYIHI  60
   61 PFCAKLCYYC GCNKVITRHA HKADQYIEYL SHEIIKRAPL FKHYSVTQMH WGGGTPTFLN 120
  121 PEQIIKLTAL IKANFNFADE GEFSIEVDPR EIELSMLDTL KEAGFNRISI GVQDFNKEVQ 180
  181 VAVNREQDEQ FIFDLMAKAK AMGFVSTNID LIYGLPHQTP ETFAATMQRV LDLSPDRLSV 240
  241 FNYAHLPARF AAQRKIKDEH LPSPKQKLEM LHQTIETLTG AGYQYIGMDH FAKPDDELAK 300
  301 LQREGKLHRN FQGYTTQEEC DLLGLGVSSI SQIGDCYAQN QKDIRPYYEA IDKDGHALWK 360
  361 GCSLNRDDEI RRVVIKQLIC HFDLDMAKID EKLGIKFEEY FAEDLKLLQT FIDDKLVEVA 420
  421 DRKITISPTG RLLIRNICMC FDLYYRQKAR QQQFSRVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..458] PSI-BLAST 113.0 Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • coproporphyrinogen oxidase activity
    		•  2.62711845981655 bayes_pls_golite062009
  • biotin synthase activity
    		•  2.22585029668171 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  2.08127882819276 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  1.93818807823452 bayes_pls_golite062009
  • catalytic activity
    		•  1.85375915825216 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  1.26112752511053 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  0.35292941647096 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle