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Protein Overview: gi|24350998, gi|...

General Information:
Name(s) found: gi|24375997 [NCBI NR]
gi|24350998 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24375997|ref|NP_720040.1| coproporphyrinogen III oxidase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350998|gb|AAN57484.1|AE015884_6 oxygen-independent coproporphyrinogen III oxidase, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: porphyrin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: coproporphyrinogen oxidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVIQTLNG AIATPYQANI TVPNWMLSSM ERVMQYYVDK NLRLDTLSAD IMPAPVEGKK  60
   61 YMLYAHVPFC HTLCSYCTFH RFMFKEDKAR AYFISLRKEM EMVKALGYDF ESMYIGGGTT 120
  121 TVLEDELART IEHAKTLFPS IKEVSCESDP QHLDSPGFKQ LKGLVDRMSI GVQSFNDDIL 180
  181 KMTDRLEKFG TGQQTFDKIM AAKELFPIIN VDLIFGFRGQ TDEVIQHDLD MASRLDPRQI 240
  241 TTYPLMITHQ TRKSVKGKLA APQADMANQY RQILNSLNGQ YNQLSAWAFG KANDEGFDEY 300
  301 VIDYDEYLGV GSGSFSFLND TLYVNTFSLR KYQERIAAGK MGVEQQKNYN KKDVMQYRFL 360
  361 LGMFSGRLSR KYFRETFGVN LDTALFKEMT SMKLIGAIKN DPTDPDNLII TDNGKMMGLL 420
  421 MMKEFYAGMD NVRAQLRKPL KPCDM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..445] PSI-BLAST 79.69897 Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • coproporphyrinogen oxidase activity
    		•  2.62711845981655 bayes_pls_golite062009
  • biotin synthase activity
    		•  2.22585029668171 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  2.08127882819276 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  1.93818807823452 bayes_pls_golite062009
  • catalytic activity
    		•  1.85375915825216 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  1.26112752511053 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  0.35292941647096 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle