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Protein Overview: gi|24375517, gi|...

General Information:
Name(s) found: gi|24375517 [NCBI NR]
gi|24350386 [NCBI NR]
Description(s) found:
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  • gi|24375517|ref|NP_719560.1| excinuclease ABC, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350386|gb|AAN57004.1|AE015834_7 excinuclease ABC, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • excinuclease ABC, A subunit [Shewanella oneidensis MR-1]gi|24350386|gb|AAN57004.1| excinuclease ABC, A subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • excinuclease ABC, A subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 950 amino acids

    Gene Ontology:
    Cellular Component: excinuclease repair complex [ISSLink to PubMed article]
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: excinuclease ABC activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKIEIRGAR THNLKNINLT IPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY  60
   61 ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LFARVGEPRC 120
  121 PTHGQPLAAQ TVSQMVDKVL EMPEDSRLML LAPVVNGRKG EHVKLLEGLS AQGYIRARID 180
  181 GEVCDLTDPP TLDLHVKHTI EVVVDRFKVR SDIQQRLAES FETALELSGG IAVVASMDEG 240
  241 TTEELIFSAN FACPHCGYSM AELEPRIFSF NNPAGACPTC DGLGVQQFFD PDRVITNPEL 300
  301 SLAGGAIRGW DRRNFYYFQM LSSLADHYKF DVEAPFEQLS DKVRKIVLYG SGKDSIAFKY 360
  361 INDRGDVVVR NHPFEGILNN MDRRYRETES NAVRDELAKF INTQACQSCG GSRLREEARH 420
  421 VFIGDLNLPK LTVWSIGEAL DYFDKLEFTG QKAQIAEKIL KEVRDRLGFL VNVGLNYLSL 480
  481 SRSAETLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLQT LIHLRDLGNT 540
  541 VIVVEHDEDA IRMADHIIDI GPGAGVHGGE VICDGPIEKI IACDESVTGQ YISGKRNIHI 600
  601 STPRTPFDPK QVIELYGARG NNLRNVDLTI PIGLFTCVTG VSGSGKSTLI NDTFFKIAHK 660
  661 MLNGATVDEP APYDRIVGME QCDKVVDIDQ SPIGRTPRSN PATYTGIFTP IREIFAGTQE 720
  721 SRTRGYQVGR FSFNVKGGRC EACQGDGLIK VEMHFLPDVY VPCDACKGKR YNRETLEVRY 780
  781 KGKNIHEVLQ MTVEDAREFF DAVPAIARKL QTLMDVGLSY VRLGQSATTL SGGEAQRVKL 840
  841 AKELSKRDTG KTLYILDEPT TGLHFADIQL LLDVLHRLKS HGNTIVVIEH NLDVIKTADW 900
  901 IIDLGPEGGG GGGTILATGT PEDVALHPTS HTARFLKPLL ERDAQLTKQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..582] PSI-BLAST 33.0 RNase-L Inhibitor
    2 View Details [583..696] FFAS03 2.54 No description for 2hydA was found.
    3 View Details [697..950] PSI-BLAST 61.09691 No description for 2d62A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle