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Protein Overview: gi|24350251, gi|...

General Information:
Name(s) found: gi|24375413 [NCBI NR]
gi|24350251 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24375413|ref|NP_719456.1| biotin synthase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350251|gb|AAN56900.1|AE015824_11 biotin synthase family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 359 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biotin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: biotin synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRPSPPAP VTQPTSVKPT LLNTVFSYAE ILSLLQGQDD EWLFSRAKLA TELEFNQQVY  60
   61 LRGIVEFSNH CRNHCHYCGL RTENRQVTRY RLSNEEILNA VDSIAELGLG TVVLQSGDDF 120
  121 NYSGNRISTL ITEIKRHHNL AITLSLGDRK HQELEKWREA GADRYLLKME TFDRALFAQC 180
  181 RPKANFDERI ARLNYLKSLG YQTGSGIIVD LPGMTDAILA RDIQHLSELQ LDMLACGPFI 240
  241 AHHQTPFTTS PNGSALKSHR VSAILRLMNP GANIPATSSL DALDKGAREQ ALKRGCNVIM 300
  301 PSFTPTKVSG DYSIYPGKNQ QQHPAAERLN QVCQQIQRHG LIPSFSRGDS KRTQYVSRH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..359] PSI-BLAST 57.69897 The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • biotin synthase activity
    		•  5.10405272282485 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  4.95763122788913 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  2.53050234490351 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  2.01614319399424 bayes_pls_golite062009
  • catalytic activity
    		•  1.85375915825216 bayes_pls_golite062009
  • coproporphyrinogen oxidase activity
    		•  1.27516985221578 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  0.604275066192139 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  0.0323089631112699 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle