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Protein Overview: gi|24374870, gi|...

General Information:
Name(s) found: gi|24374870 [NCBI NR]
gi|24349568 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374870|ref|NP_718913.1| oxygen-independent coproporphyrinogen III oxidase, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349568|gb|AAN56357.1|AE015773_2 oxygen-independent coproporphyrinogen III oxidase, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 385 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: porphyrin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: coproporphyrinogen oxidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNVSPQLT LPPLSLYIHI PWCVQKCPYC DFNSHGQNGE LPQQAYVDAL LADLRQDLHL  60
   61 VQGRKLHTIF IGGGTPSLFD ANQIKRILDD ANALIPFSDG IEITMEANPG TLEHDDFSAY 120
  121 RAAGVTRLSI GVQSFSKDKL NLLGRIHDQN EAQTAAQKAR QADYLSFNLD LMHGLPNQSF 180
  181 EEAMADIDTA ASLNPPHLSW YQLTIEPNTL FHSKPPQLPD DEDLWQIYEQ GQQKLAALGY 240
  241 EQYEISAYAK PGYQCQHNLN YWQFGDYLGI GCGAHGKVTL PEENRIIRTV KIKHPKGYLT 300
  301 ADNYTFEQTE VAQEDRALEY LMNRLRLMTP IPKQEFEDRT GLPRDVLKDG MEKAKQRGLL 360
  361 TESAEHWQLT NKGHMFVNDL LTQFC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..385] PSI-BLAST 70.30103 Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • coproporphyrinogen oxidase activity
    		•  2.41520078366277 bayes_pls_golite062009
  • biotin synthase activity
    		•  2.08611410724267 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  1.93582371651697 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  1.85924424492023 bayes_pls_golite062009
  • catalytic activity
    		•  1.48331922124015 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  0.947420499060224 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  0.107588242235537 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle