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Protein Overview: gi|24349491, gi|...

General Information:
Name(s) found: gi|24374810 [NCBI NR]
gi|24349491 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374810|ref|NP_718853.1| Pal/histidase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349491|gb|AAN56297.1|AE015767_6 Pal/histidase family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 549 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cellular amino acid metabolic process [ISSLink to PubMed article]
    Molecular Function: ammonia-lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKTIPLVI AAILPMTSIA ATHTLDGTSL TVDKLWEISK SGEDVNISKE GWERIRASYK  60
   61 APIDAAEDGR SIYGLTVNYG ALKDQRVAGA SVENEPNRSE SIKFNERQMR IQAAGMEPFL 120
  121 PEAESKMAMV IRLNQMAAGF TGMSVDAANA YMEYINNDVY PLIPSRGSEG ANDLSMVTHV 180
  181 GLALMGEWDV MYQGKRRSSA EVRKELGLKK YQPFGMDGIS ILSNSNVAEA QSITAVKKVE 240
  241 HLLDLSSVII ASSLEALNGN VSPFLWHTVD TKGWPQGHEA AESILSHLKG SYLWSLDSKR 300
  301 NLQDPLSFRS SGQILAAAKE ELRQAKELLN TAINHTTDNP IVHTNARDDL WYSNSDYVDG 360
  361 LRVGGKNVFV NSGSNFDNTQ LAVQLESLSR ALAQVIHISA WRTTQLDDGH RTKLTTYLIS 420
  421 KENVGGDGFA NIAQSMSGLY AEAMSLTNSA AIYGVPTSVG IEETFSNVNL IANRLDKIAD 480
  481 IAYEIYSYEV LHTTQGMDIR TKEYSQKMGN GTSEFLHEYR KYVPFVSKDR IYTPDINNGV 540
  541 KFLKTYSTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..549] PSI-BLAST 1000.0 Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histidine ammonia-lyase activity
    		•  3.53226750625841 bayes_pls_golite062009
  • catalytic activity
    		•  2.51282259572665 bayes_pls_golite062009
  • lyase activity
    		•  2.31268471569846 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  2.2046475419807 bayes_pls_golite062009
  • amidine-lyase activity
    		•  0.901614580251298 bayes_pls_golite062009
  • argininosuccinate lyase activity
    		•  0.617974375213548 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.491229595527877 bayes_pls_golite062009
  • fumarate hydratase activity
    		•  0.364320954362762 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle