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Protein Overview: gi|24374686, gi|...

General Information:
Name(s) found: gi|24374686 [NCBI NR]
gi|24349335 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374686|ref|NP_718729.1| UDP-galactose 4-epimerase, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349335|gb|AAN56173.1|AE015755_2 UDP-galactose 4-epimerase, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 309 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: galactose metabolic process [ISSLink to PubMed article]
    Molecular Function: UDP-glucose 4-epimerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTQSILLTG ATGFVGQQIL RQLPQDTRVF GRTKPARDCH FFAGELTANT DYRSALSGVD  60
   61 VVIHCAARAH VMNETANNAA QLYQEVNTLV TLALAEQAAA AGVKRFIFIS TIKVNGEATI 120
  121 AGQLFRASDA RQPLDHYGES KAKAEIGLFD IARKTEIEVV IIRPPLVYGP NVKANFATML 180
  181 NLAKKNLPLP FGAIHNKRSM VALDNLVDLI VTCIEHPNAA NQIFLVSDDQ DVSTTELLKL 240
  241 MTGAAGKKPR LLPVPMAWLI LAGKVTGNQA IIDRLCGNLQ VDITHTKNTL SWQPPITVEE 300
  301 GVRRCFVKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..309] PSI-BLAST 76.154902 dTDP-glucose 4,6-dehydratase (RmlB)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.13934644118967 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • steroid dehydrogenase activity
    		•  1.75109362865449 bayes_pls_golite062009
  • steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.55012034958204 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.881088609158401 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.82673050487418 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.47

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle