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Protein Overview: gi|24349186, gi|...

General Information:
Name(s) found: gi|24374579 [NCBI NR]
gi|24349186 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374579|ref|NP_718622.1| Pal/histidase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349186|gb|AAN56066.1|AE015742_2 Pal/histidase family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 524 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cellular amino acid metabolic process [ISSLink to PubMed article]
    Molecular Function: ammonia-lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVVLDGKH LTQDQAWAIA DGAKVKIAPQ AKTQLVKAHE LLMEAARLGK PVYGLTVGVG  60
   61 LNKDHKLFDA NGKLSDAVLD ASRSFNFSTL RAHSAGVGEA APIRLTRVAL AVRLNTMLAG 120
  121 QTGVQPEVAE LYEAYLNKGL TPVIPSKGTV GEADILLSSH VGLAMIGEWE VFYKGQRVSS 180
  181 KEAMADAGIT PLVPMGKDAL SILSNNAFAV AYAMQGYREA KQLLSVSPTV FGLSLEGLNG 240
  241 NVAPFLPQTN DIRPFPYIKT ATSDILKQLD GSYLWQLNDE RPLQDPLSFR TTAYTFAGAE 300
  301 QALASLDEVI NIQINHSDDN PAVIVGASNQ YAQFPQVAKY VVEGQGGVFP TTNFEPLPVA 360
  361 LAVQNLSVAL THVSHNSVMR TIHLSDEHFT KLTRFLSAPE NQGHAFGAIQ KAFVDMQVRN 420
  421 KQLATPVSFD GISIAGGIED TFTNLKLASD NLIQIVDNTR VIYGLELLHS TQAIDLRKQA 480
  481 NPELQLGKAT QAMYKAYRAK VPFVAKDRPF TPDIQASTDF ITHY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..524] PSI-BLAST 1000.0 Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histidine ammonia-lyase activity
    		•  3.53226750625841 bayes_pls_golite062009
  • catalytic activity
    		•  2.51282259572665 bayes_pls_golite062009
  • lyase activity
    		•  2.31268471569846 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  2.2046475419807 bayes_pls_golite062009
  • amidine-lyase activity
    		•  0.901614580251298 bayes_pls_golite062009
  • argininosuccinate lyase activity
    		•  0.617974375213548 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.491229595527877 bayes_pls_golite062009
  • fumarate hydratase activity
    		•  0.364320954362762 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle