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Protein Overview: gi|24349045, gi|...

General Information:
Name(s) found: gi|24374466 [NCBI NR]
gi|24349045 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374466|ref|NP_718509.1| prophage LambdaSo, host specificity protein J, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349045|gb|AAN55953.1|AE015733_5 prophage LambdaSo, host specificity protein J, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 1341 amino acids

    Gene Ontology:
    Cellular Component: provirus [TASLink to PubMed article]
    Biological Process: viral reproduction [ISSLink to PubMed article]
    Molecular Function: binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPALNQKL VIHGAKAGES EQRTPVESPD DLRSIAKAKI LLAIGEGEFE GQLSGKNVFL  60
   61 DGTPLLDANG AENFPGVIWD FRHGSVHQTY IPGVPAVENE VALGIELKSE QPYTRAITNS 120
  121 LLSAVRVRFR WPALQQQLDN GDVNGYRIEY AIDLSTNGGS YQTVLSTAVD GKTTQPYERS 180
  181 HRIDLPAGNS WQIRIRRLTP NQNNNRVADL MQIAAITDVI DRKLKYPNTA LLYVEFDASQ 240
  241 FQNIPVVSCE PFMRKVKVPT NYNPLTRQYT GVWDGSFKIA WTDNPAWVSY DIILDDRFGT 300
  301 GKRINASLVD KWELYRIAQY CDQLVPNGKG GMEPRYICNI YIQQATEAWQ VLRDLASIYR 360
  361 GMTYWSNGQI YSVADMPRDM DFIYTNANVI DGKFSYSSSS EKVKYTRALI SWDNPDNAYE 420
  421 SDVTSVSDQA LQRRYGDNVV ELSALGCTRE SEAQRRGKWA LYTNNNDRAV NFKVGMDGSI 480
  481 PLPGFVIGIA DQLIAGSRIG GRISAVNGKQ ITLDRATTIA VNDRLIINLP SGKAQARTIE 540
  541 AVNGRVVTVT TEYSETPLPQ LLWSVESDEL KLQQFRVLRV AKANSDSIEY EITAVEHNPS 600
  601 KYPYIDTGAR LEDRPISKLP VGAQQAPATV TISQSTFTEQ TLSVTTMTIQ WATAKNAVAY 660
  661 EVEWRKDSGE WVKLPKTSGT SVDIRGVYTG QYIARVRAIN SVDVSSVPKS SDLTNITGKT 720
  721 GLPPAVASFT TTPLVFGIAL NWLFPAGAED TLRTEIEYGP NNNDNGMIKL GDFAYPINSH 780
  781 TMTGLSAGVS FWFRARLVDR TGNVGPWSNF VNGQSSTDQT KYDEYFSERI TSSALGQELL 840
  841 DEIELIPVIK AETDKIPDIE NDIAVAQSKI DQMQADIADI AGAPEWDSNI AYFSGQLVKY 900
  901 QGKLYSAKQD VPAGTLPTNA TYWEKIGEYS TIGEALAALT VRVDTVETSI EEIDGKLTAE 960
  961 SSRIDGIFAQ VNPPLAGDTG WNAGSTVVFA GVWSEQYARA AADEALAKSI ETVAATIDKN1020
 1021 AAAIITEQMA RATADESLAK QIISISATVN GNAALIKQEQ TARADADSAL GQRIDTVQAT1080
 1081 TGANTAAIQQ EQTARANADS ALGQRIDTVQ ATTGANTAAI QQEQTARANA DSALGQRIDT1140
 1141 VQATTGANTA AIQQEQTARA NADSALGQRI DTVQATAGAN TAAVQQTSTA LAELDGKLQA1200
 1201 MYSIKVGVTA DGKYYGAGMA IGVENTPEGM QSQVLFTADR FAIVNKITGT STITTPFAVQ1260
 1261 GGQVFINSAV IGDGTITNAK IGDYIESTNY IAQNTGWKLD KSGVFEINGN TAGEGRMQIS1320
 1321 NNQIDVYDNS GNLVCRMGKL T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] MSA 2.078946 View MSA. No confident structure predictions are available.
    2 View Details [190..347] MSA 1.121955 View MSA. No confident structure predictions are available.
    3 View Details [348..419] PSI-BLAST 32.39794 FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10
    4 View Details [420..784] PSI-BLAST 12.69897 No description for 2v5yA was found.
    5 View Details [785..1224] PSI-BLAST 7.522879 Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin
    6 View Details [1225..1341] PSI-BLAST 4.154902 COLICIN IA


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle