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Protein Overview: gi|24374187, gi|...

General Information:
Name(s) found: gi|24374187 [NCBI NR]
gi|24348700 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24374187|ref|NP_718230.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348700|gb|AAN55674.1|AE015706_2 phospho-2-dehydro-3-deoxyheptonate aldolase, trp-sensitive [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 354 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: chorismate biosynthetic process [ISSLink to PubMed article]
    Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKTDELRT SLLAKVISPA QLASEYPLTQ DAADYLVQQR REVEAIIMGE DQRLLVIIGP  60
   61 CSIHDTQAAL DYARRLAVLH QELKDDLCIL MRVYFEKPRT IVGWKGLISD PDLDGSFEPN 120
  121 KGLRIARQLL QQITELKLPI ATEFLDMVNG QYIADLITWG AIGARTTESQ VHREMASALS 180
  181 CPVGFKNGTD GNINIAVDAV RAAKVPHIFY SPDKDGAMSV YRTHGNPYGH IILRGGKKPN 240
  241 YFEQDIEQAR LKLESVNVTP RVVVDFSHGN SEKNHLKQLV VAENIMAQMR AGSTAIAGIM 300
  301 AESFLQEGNQ KVIEGQPLCY GQSITDACLH WADSEKLLRD LASASRDRRE LLGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..354] PSI-BLAST 146.0 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3-deoxy-7-phosphoheptulonate synthase activity
    		•  2.72022882819661 bayes_pls_golite062009
  • catalytic activity
    		•  2.67031204377352 bayes_pls_golite062009
  • lyase activity
    		•  0.740424046054758 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
    		•  0.719960432098845 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.606352769346285 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  0.490222900376021 bayes_pls_golite062009
  • transferase activity
    		•  0.464721888799972 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.36754360512349 bayes_pls_golite062009
  • 3-deoxy-8-phosphooctulonate synthase activity
    		•  0.0356008407895519 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle