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Protein Overview: gi|24348193, gi|...

General Information:
Name(s) found: gi|24373801 [NCBI NR]
gi|24348193 [NCBI NR]
Description(s) found:
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  • gi|24373801|ref|NP_717844.1| L-serine dehydratase 1 [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348193|gb|AAN55288.1|AE015666_12 L-serine dehydratase 1 [Shewanella oneidensis MR-1] [NCBI NR]
  • L-serine dehydratase 1 [Shewanella oneidensis MR-1]gi|24348193|gb|AAN55288.1| L-serine dehydratase 1 [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • L-serine dehydratase 1 [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: gluconeogenesis [ISSLink to PubMed article]
    L-serine catabolic process [ISSLink to PubMed article]
    Molecular Function: L-serine ammonia-lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVFDMFKI GIGPSSSHTV GPMKAGKIFM QHLADSGQIG QIDELRAELF GSLGQTGKGH  60
   61 GTGKAVILGL MGEDPETVDT DSIDGILEHV SKSETLTISC GKVVKFTRED GITYHRRKSL 120
  121 PAHANAMTLY AYSKGECIFE RTYYSVGGGF ILDEDEINQR NASPASQIES APYDFNSSAQ 180
  181 LLELCTEHGL SISSLMMANE LSLASEEEVK AKLWNIWQTM KTCIERGYQK EGILPGGLKL 240
  241 RRRAPALYRR LKAEGRNNVD PLTAMDWVDL FALSVNEQNA AGDRVVTAPT NGAAGIIPAV 300
  301 LCYYDTFVQE VDIDVCARYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAGALTE 360
  361 IMGGTVEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAIKAINA SRMALRGDGN 420
  421 HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..170] PSI-BLAST 55.0 No description for 2iqqA was found.
    2 View Details [171..458] FFAS03 0.974 No description for 2hp0A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ammonia-lyase activity
    		•  2.88530899180509 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  2.78754274515759 bayes_pls_golite062009
  • L-serine ammonia-lyase activity
    		•  2.3422472303008 bayes_pls_golite062009
  • catalytic activity
    		•  2.16480681433985 bayes_pls_golite062009
  • lyase activity
    		•  2.01162959785703 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle